Factsheet for VIT_11s0037g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57900.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72322	Soybean	cytosol	69.81	70.26
AT5G57900.1	Thale cress	cytosol	60.06	61.67
GSMUA_Achr4P20480_001	Banana	cytosol	62.34	61.15
CDY57461	Canola	cytosol	59.42	61.0
Bra002686.1-P	Field mustard	cytosol	58.77	60.33
CDY51272	Canola	cytosol	58.77	60.33
PGSC0003DMT400028954	Potato	cytosol	57.14	57.14
Solyc07g005750.2.1	Tomato	cytosol	56.49	55.77
TraesCS1D01G057200.3	Wheat	cytosol	55.19	54.31
TraesCS1B01G073600.1	Wheat	cytosol	54.55	53.85
CDX68681	Canola	cytosol	50.65	53.61
EES14834	Sorghum	cytosol	54.87	53.48
AT4G30640.1	Thale cress	cytosol	51.62	52.82
CDY55615	Canola	cytosol	40.91	52.07
Zm00001d050166_P001	Maize	cytosol, extracellular	53.25	51.9
Bra010279.1-P	Field mustard	cytosol	50.65	51.83
CDY23249	Canola	cytosol	46.1	51.64
CDY28199	Canola	cytosol	47.4	50.52
Bra024054.1-P	Field mustard	cytosol	44.81	49.64
CDY39231	Canola	cytosol	34.74	49.54
CDY39233	Canola	cytosol	44.48	49.28
Bra011207.1-P	Field mustard	cytosol	49.35	49.03
CDX72258	Canola	cytosol	44.48	48.75
CDY39226	Canola	cytosol	43.51	48.03
CDX72257	Canola	cytosol	43.51	48.03
Bra024057.1-P	Field mustard	cytosol	43.51	48.03
TraesCS1A01G056500.2	Wheat	cytosol	53.25	46.72
Bra038818.1-P	Field mustard	cytosol	24.68	46.63
Bra024055.1-P	Field mustard	cytosol	44.48	45.07
HORVU1Hr1G011370.2	Barley	cytosol	53.57	44.84
CDX68676	Canola	mitochondrion	18.83	42.96
CDX72259	Canola	cytosol	28.9	42.58
Os08t0269800-01	Rice	cytosol	19.81	39.35
CDX68675	Canola	cytosol	20.45	37.5
CDY49309	Canola	cytosol	30.52	36.72
Bra011205.1-P	Field mustard	cytosol	29.55	33.09
CDY13002	Canola	nucleus	21.43	26.09
VIT_07s0031g03110.t01	Wine grape	cytosol	22.4	24.47
VIT_18s0001g06220.t01	Wine grape	cytosol	23.05	24.32
VIT_00s0391g00040.t01	Wine grape	cytosol	23.7	23.03

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100257095	wikigene:100257095	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	ProteinID:CCB59767
ProteinID:CCB59767.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6HYK3	EMBL:FN596499	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100257095
wikigene:LOC100257095	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516
PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	TIGR:TC64150
UniParc:UPI00015C9A28	ArrayExpress:VIT_11s0037g00430	EnsemblPlantsGene:VIT_11s0037g00430	EnsemblPlants:VIT_11s0037g00430.t01	unigene:Vvi.10101	RefSeq:XP_002277519
RefSeq:XP_002277519.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:8234008..8235943

Molecular Weight (calculated)

35098.7 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.338

Length

308 amino acids

Sequence
(BLAST)

001: MDNQGGQADS ELNSDWSELT HECLTNVLSR LTLHDRWTGP MLVCKSWLHA CKDPSLFSTL DLEVHFDSPT ESARWWTPEF ERKIDAMLRS IAEWSGGSIT
101: EIRVRHCSDR SLSFAADRCS NLEVLSIKSC PNVTDASMAR VAFRCLKLRE VDISYCYEIS HESLILLGRN CPNLKILKRN LMNWLDPSQH IGIVPNEYLN
201: ACPQDGDSEA AAIGKTMPHL EHLELRFSKI SAKGLALICD GCLNLEYLDL SGCANLTSRD IANATSNLKN LKKIEKPNFY IPRSVFHAER YGHWRLYDDR
301: FQTDTFRI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.