CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72258	Canola	cytosol	63.64	47.33
CDY39233	Canola	cytosol	62.68	47.12
CDY39231	Canola	cytosol	39.71	38.43
CDY39226	Canola	cytosol	51.2	38.35
CDX72257	Canola	cytosol	50.24	37.63
CDY28199	Canola	cytosol	44.5	32.18
CDY23249	Canola	cytosol	42.11	32.0
CDX68681	Canola	cytosol	44.5	31.96
CDX68676	Canola	mitochondrion	20.57	31.85
CDY57461	Canola	cytosol	44.02	30.67
CDY51272	Canola	cytosol	42.58	29.67
VIT_11s0037g00430.t01	Wine grape	cytosol	42.58	28.9
KRH72322	Soybean	cytosol	40.67	27.78
CDY55615	Canola	cytosol	32.06	27.69
PGSC0003DMT400028954	Potato	cytosol	38.76	26.3
GSMUA_Achr4P20480_001	Banana	cytosol	37.8	25.16
Solyc07g005750.2.1	Tomato	cytosol	37.32	25.0
Zm00001d050166_P001	Maize	cytosol, extracellular	37.32	24.68
EES14834	Sorghum	cytosol	36.36	24.05
TraesCS1B01G073600.1	Wheat	cytosol	35.89	24.04
TraesCS1D01G057200.3	Wheat	cytosol	34.45	23.0
CDX68675	Canola	cytosol	18.18	22.62
CDY49309	Canola	cytosol	26.79	21.88
HORVU1Hr1G011370.2	Barley	cytosol	35.41	20.11
TraesCS1A01G056500.2	Wheat	cytosol	33.01	19.66
Os08t0269800-01	Rice	cytosol	13.88	18.71
CDY51578	Canola	cytosol	21.05	15.28
CDX75124	Canola	cytosol	20.57	15.09
CDX90703	Canola	cytosol	21.53	14.15
CDY05035	Canola	cytosol	21.53	14.15
CDY39232	Canola	cytosol	1.44	12.5
CDY13002	Canola	nucleus	12.44	10.28

Protein Annotations

EnsemblPlants:CDX72259	EnsemblPlantsGene:GSBRNA2T00099729001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078
PANTHER:PTHR44078:SF5	PFAM:PF13516	ProteinID:CDX72259	ProteinID:CDX72259.1	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI0004EF1304	MapMan:19.2.2.8.1.4.1	:	:	:	:

Description

BnaC07g42810D

Coordinates

chrLK031796:+:326924..328154

Molecular Weight (calculated)

24111.2 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.069

Length

209 amino acids

Sequence
(BLAST)

001: MNACQDPSLN SVFDLETEFQ SLPCSTSWWW WCPEFGDKID ALLRSVVNWS QGGLKEIRVR HCTDHSISCP NLEVLWVKYC PQVTDESMLN IALMCPKLKE
101: LDISCSYEIS CACVEMIGVY CKSIETFKRN WMDLAEVWRL QRTRFRFVPP NDLDDPSIVL IFGNIDAHVI GKHMHQLKHL ELRFSTLSDK SLAKLCKGCP
201: HRVSGLVWV

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.