Factsheet for Zm00001d050166_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14834	Sorghum	cytosol	90.51	90.51
TraesCS1B01G073600.1	Wheat	cytosol	73.42	74.36
TraesCS1D01G057200.3	Wheat	cytosol	72.78	73.48
TraesCS1A01G056500.2	Wheat	cytosol	72.47	65.24
GSMUA_Achr4P20480_001	Banana	cytosol	64.56	64.97
Os08t0269800-01	Rice	cytosol	31.01	63.23
HORVU1Hr1G011370.2	Barley	cytosol	72.47	62.23
VIT_11s0037g00430.t01	Wine grape	cytosol	51.9	53.25
KRH72322	Soybean	cytosol	50.0	51.63
CDY51272	Canola	cytosol	43.35	45.67
PGSC0003DMT400028954	Potato	cytosol	44.3	45.45
AT5G57900.1	Thale cress	cytosol	43.04	45.33
Bra002686.1-P	Field mustard	cytosol	43.04	45.33
CDY57461	Canola	cytosol	42.72	45.0
Solyc07g005750.2.1	Tomato	cytosol	43.99	44.55
CDY39231	Canola	cytosol	28.16	41.2
Bra010279.1-P	Field mustard	cytosol	39.24	41.2
CDY23249	Canola	cytosol	35.76	41.09
CDX68681	Canola	cytosol	37.66	40.89
CDY39226	Canola	cytosol	36.08	40.86
Bra024057.1-P	Field mustard	cytosol	36.08	40.86
AT4G30640.1	Thale cress	cytosol	38.29	40.2
CDX72257	Canola	cytosol	34.81	39.43
CDY39233	Canola	cytosol	34.18	38.85
Bra024054.1-P	Field mustard	cytosol	34.18	38.85
CDX72258	Canola	cytosol	34.49	38.79
CDY28199	Canola	cytosol	35.44	38.75
Bra011207.1-P	Field mustard	cytosol	37.66	38.39
Bra024055.1-P	Field mustard	cytosol	36.08	37.5
CDX72259	Canola	cytosol	24.68	37.32
CDY55615	Canola	cytosol	28.48	37.19
Bra038818.1-P	Field mustard	cytosol	18.67	36.2
CDX68676	Canola	mitochondrion	14.56	34.07
CDY49309	Canola	cytosol	25.0	30.86
Bra011205.1-P	Field mustard	cytosol	24.37	28.0
CDX68675	Canola	cytosol	13.92	26.19
Zm00001d052200_P001	Maize	cytosol	21.52	20.3
CDY13002	Canola	nucleus	15.51	19.37
Zm00001d018111_P002	Maize	cytosol	20.57	18.62

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100282400	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	ProteinID:AQK52048.1	UniProt:B4FRN5
EMBL:BT039773	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0016874	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00017B76B2	EnsemblPlantsGene:Zm00001d050166	EnsemblPlants:Zm00001d050166_P001	EnsemblPlants:Zm00001d050166_T001

Description

F-box protein SKIP1

Coordinates

chr4:+:70207743..70219453

Molecular Weight (calculated)

35280.1 Da

IEP (calculated)

5.259

GRAVY (calculated)

-0.118

Length

316 amino acids

Sequence
(BLAST)

001: MATGDESETA VRASEELRDW SDMTPVCLAE AFSRLALEDL WRGAMPCCRS WRDAARSRPG LFAVLDLEPG FAESTPGAEA AAWWTPSFQR RVDAMVRSAA
101: TFAVGELCEI HVRHCSDDAL AFAAERSPRL SILSVKTSPA VTDRSMLIVG ACCPMLTELD ISNCYEISYK SLEVIGQSCQ NLRVLKRNVF NWIDPSEHAG
201: VVPEDYLREC PEDGNREAIT ISRFMPKLRH LELRFSKLTA VALGSIPEGC KDLEVLDLFG CANLTSRGID QAAASLKSLV TLVKPNFYIP RSSFHMGRYG
301: HWQLYDERFQ TNVFQI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.