CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49309	Canola	cytosol	35.57	35.16
CDY39231	Canola	cytosol	24.11	28.24
CDY55615	Canola	cytosol	25.69	26.86
CDX68681	Canola	cytosol	29.64	25.77
CDY28199	Canola	cytosol	29.25	25.61
CDX68675	Canola	cytosol	16.6	25.0
CDY39233	Canola	cytosol	27.27	24.82
CDY39226	Canola	cytosol	27.27	24.73
CDY23249	Canola	cytosol	26.88	24.73
CDX72258	Canola	cytosol	26.48	23.84
CDX72257	Canola	cytosol	26.09	23.66
Os08t0269800-01	Rice	cytosol	13.44	21.94
KRH72322	Soybean	cytosol	26.09	21.57
VIT_11s0037g00430.t01	Wine grape	cytosol	26.09	21.43
CDY51272	Canola	cytosol	23.72	20.0
PGSC0003DMT400028954	Potato	cytosol	24.11	19.81
CDY57461	Canola	cytosol	22.92	19.33
Solyc07g005750.2.1	Tomato	cytosol	23.72	19.23
GSMUA_Achr4P20480_001	Banana	cytosol	20.16	16.24
Zm00001d050166_P001	Maize	cytosol, extracellular	19.37	15.51
EES14834	Sorghum	cytosol	19.37	15.51
TraesCS1B01G073600.1	Wheat	cytosol	18.97	15.38
TraesCS1D01G057200.3	Wheat	cytosol	17.79	14.38
TraesCS1A01G056500.2	Wheat	cytosol	18.97	13.68
HORVU1Hr1G011370.2	Barley	cytosol	18.97	13.04
CDY39232	Canola	cytosol	1.19	12.5
CDX72259	Canola	cytosol	10.28	12.44
CDY05035	Canola	cytosol	13.83	11.01
CDX90703	Canola	cytosol	13.83	11.01
CDX75124	Canola	cytosol	9.88	8.77
CDY51578	Canola	cytosol	9.88	8.68
CDX68676	Canola	mitochondrion	4.35	8.15

Protein Annotations

EnsemblPlants:CDY13002	EnsemblPlantsGene:GSBRNA2T00070768001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	ProteinID:CDY13002	ProteinID:CDY13002.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EE81D4
UniProt:A0A078FJ66	MapMan:35.1	:	:	:	:

Description

BnaC07g03010DBnaC07g03010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ66]

Coordinates

chrLK032030:-:82255..83217

Molecular Weight (calculated)

28392.7 Da

IEP (calculated)

9.837

GRAVY (calculated)

-0.609

Length

253 amino acids

Sequence
(BLAST)

001: MNDKSEGKKE VIGSGLGRDW SELNREYLID ILSRLSLEER WSGPMLVCKP WMYACDDPSL NSVFDLYTWF EGSRISNLWY SYEFEQKVDV TTHLRSRKFW
101: PIKAQINFRR RDRRRKRRKR RKSVHKEEKW ENIGEVELPP EIAVATTARG HASLSPVFAD QDEAVATDHA AIGVRTKPLE PPEVSPLCAR ALHAPPPEIT
201: SPAGPPPRHH RNAVAAAVLR LLLSPSSAVT AGKPSPSPSV TVAGDSPTTR QPG

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.