CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28199	Canola	cytosol	83.51	84.08
AT4G30640.1	Thale cress	cytosol	71.82	69.44
CDY23249	Canola	cytosol	64.6	68.36
CDY55615	Canola	cytosol	54.64	65.7
CDY39231	Canola	cytosol	43.99	59.26
CDY39233	Canola	cytosol	54.3	56.83
CDX72258	Canola	cytosol	54.64	56.58
CDY39226	Canola	cytosol	52.58	54.84
CDX72257	Canola	cytosol	51.89	54.12
VIT_11s0037g00430.t01	Wine grape	cytosol	53.61	50.65
CDX68675	Canola	cytosol	28.18	48.81
KRH72322	Soybean	cytosol	50.86	48.37
CDY51272	Canola	cytosol	49.14	47.67
CDY57461	Canola	cytosol	47.77	46.33
CDX72259	Canola	cytosol	31.96	44.5
CDX68676	Canola	mitochondrion	20.27	43.7
PGSC0003DMT400028954	Potato	cytosol	45.36	42.86
Solyc07g005750.2.1	Tomato	cytosol	43.99	41.03
GSMUA_Achr4P20480_001	Banana	cytosol	43.64	40.45
CDY49309	Canola	cytosol	34.71	39.45
TraesCS1B01G073600.1	Wheat	cytosol	40.55	37.82
TraesCS1D01G057200.3	Wheat	cytosol	40.55	37.7
Zm00001d050166_P001	Maize	cytosol, extracellular	40.89	37.66
EES14834	Sorghum	cytosol	40.55	37.34
Os08t0269800-01	Rice	cytosol	18.21	34.19
TraesCS1A01G056500.2	Wheat	cytosol	40.89	33.9
HORVU1Hr1G011370.2	Barley	cytosol	41.58	32.88
CDY13002	Canola	nucleus	25.77	29.64
CDY39232	Canola	cytosol	1.72	20.83
CDY05035	Canola	cytosol	21.99	20.13
CDX90703	Canola	cytosol	21.99	20.13
CDX75124	Canola	cytosol	19.24	19.65
CDY51578	Canola	cytosol	18.9	19.1

Protein Annotations

EnsemblPlants:CDX68681	EnsemblPlantsGene:GSBRNA2T00130358001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078
PANTHER:PTHR44078:SF5	ProteinID:CDX68681	ProteinID:CDX68681.1	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EEB7D0	MapMan:19.2.2.8.1.4.1	:	:	:	:

Description

BnaC01g07720D

Coordinates

chrLK031789:+:742001..743160

Molecular Weight (calculated)

33015.9 Da

IEP (calculated)

7.320

GRAVY (calculated)

-0.173

Length

291 amino acids

Sequence
(BLAST)

001: MATNYGGGMG SGLGPNWAEM TRECLLDIFS RLSQEERWIG PMLVCKTWMN TCHEPSLNTI FDLETRFQSF SKSINWWTPE FEEKVDAFLR SVVDWSEGGL
101: TEIRVRHCTD RSLSYVAERC PKLEVLWIKS CPHVTDASMA KIASNCPNLR ELDVSYSYCI SHEALSMLGR HCPNLEILKR NLFPRQGPNV STIVAPVDYI
201: VAFPRYGNIE AQIIGRHMPR LKHLELQYCT MTVKGLNSVC KGCSNLEYVD LSGCISLTNS EITRCASSLK NLLEIKKPNF NRPVDILLLP N

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.