CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23249	Canola	cytosol	83.47	73.45
Bra010279.1-P	Field mustard	cytosol	88.02	70.76
CDX68681	Canola	cytosol	65.7	54.64
CDY28199	Canola	cytosol	62.81	52.6
CDY39231	Canola	cytosol	44.21	49.54
CDX68675	Canola	cytosol	32.23	46.43
CDY39233	Canola	cytosol	50.41	43.88
CDY39226	Canola	cytosol	50.41	43.73
CDX72257	Canola	cytosol	49.59	43.01
CDX72258	Canola	cytosol	49.17	42.35
VIT_11s0037g00430.t01	Wine grape	cytosol	52.07	40.91
KRH72322	Soybean	cytosol	49.59	39.22
CDY51272	Canola	cytosol	47.93	38.67
CDY57461	Canola	cytosol	47.52	38.33
CDY49309	Canola	cytosol	40.08	37.89
PGSC0003DMT400028954	Potato	cytosol	41.74	32.79
CDX72259	Canola	cytosol	27.69	32.06
GSMUA_Achr4P20480_001	Banana	cytosol	40.91	31.53
Solyc07g005750.2.1	Tomato	cytosol	40.5	31.41
TraesCS1B01G073600.1	Wheat	cytosol	37.19	28.85
TraesCS1D01G057200.3	Wheat	cytosol	37.19	28.75
Zm00001d050166_P001	Maize	cytosol, extracellular	37.19	28.48
Os08t0269800-01	Rice	cytosol	17.77	27.74
EES14834	Sorghum	cytosol	35.95	27.53
CDY13002	Canola	nucleus	26.86	25.69
TraesCS1A01G056500.2	Wheat	cytosol	37.19	25.64
HORVU1Hr1G011370.2	Barley	cytosol	37.19	24.46
CDX68676	Canola	mitochondrion	11.57	20.74
CDY39232	Canola	cytosol	1.65	16.67
CDY05035	Canola	cytosol	20.25	15.41
CDX90703	Canola	cytosol	20.25	15.41
CDX75124	Canola	cytosol	16.12	13.68
CDY51578	Canola	cytosol	16.12	13.54

Protein Annotations

EnsemblPlants:CDY55615	EnsemblPlantsGene:GSBRNA2T00017130001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078
PANTHER:PTHR44078:SF5	ProteinID:CDY55615	ProteinID:CDY55615.1	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EF3886	UniProt:A0A078IYU9	MapMan:19.2.2.8.1.4.1	:	:	:

Description

BnaC03g77500DBnaC03g77500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYU9]

Coordinates

chrLK033416:+:19444..20971

Molecular Weight (calculated)

28105.0 Da

IEP (calculated)

6.658

GRAVY (calculated)

-0.203

Length

242 amino acids

Sequence
(BLAST)

001: MGTLLSPGWA DLTRECLIDI FSRLSIDQRW IGPMLVCKTW MNVCHDPLFN TIFDLETRFQ SFPESINWWN PEFEDKVDSF LRSVVDRSEG GLTEIRVRHC
101: TDRSLSYAAE RCPKLEVLWI KSCPNVTDAS MTKIASNCPN LKEFDMSYSY GISHESLVML GRNFNNLKIL KRNLYPLLDP NMPTIIAPLD YLATYPKHAN
201: VEAEVLLWWT SSLMSLREIN KPNFMFPMAI LRMSRPDHPR YG

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.