Factsheet for GSMUA_Achr4P20480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G057200.3	Wheat	cytosol	67.2	67.41
TraesCS1B01G073600.1	Wheat	cytosol	66.88	67.31
EES14834	Sorghum	cytosol	66.56	66.14
Zm00001d050166_P001	Maize	cytosol, extracellular	64.97	64.56
VIT_11s0037g00430.t01	Wine grape	cytosol	61.15	62.34
TraesCS1A01G056500.2	Wheat	cytosol	65.92	58.97
HORVU1Hr1G011370.2	Barley	cytosol	67.83	57.88
KRH72322	Soybean	cytosol	56.05	57.52
AT5G57900.1	Thale cress	cytosol	51.59	54.0
CDY57461	Canola	cytosol	49.04	51.33
CDY51272	Canola	cytosol	49.04	51.33
PGSC0003DMT400028954	Potato	cytosol	50.32	51.3
Bra002686.1-P	Field mustard	cytosol	48.73	51.0
Os08t0269800-01	Rice	cytosol	24.84	50.32
Solyc07g005750.2.1	Tomato	cytosol	50.0	50.32
CDX68681	Canola	cytosol	40.45	43.64
CDY23249	Canola	cytosol	38.22	43.64
CDY28199	Canola	cytosol	40.13	43.6
AT4G30640.1	Thale cress	cytosol	41.4	43.19
Bra010279.1-P	Field mustard	cytosol	41.4	43.19
CDY39233	Canola	cytosol	37.58	42.45
Bra024054.1-P	Field mustard	cytosol	37.58	42.45
CDY39231	Canola	cytosol	28.66	41.67
Bra011207.1-P	Field mustard	cytosol	41.08	41.61
CDX72258	Canola	cytosol	36.94	41.28
CDY55615	Canola	cytosol	31.53	40.91
CDY39226	Canola	cytosol	36.31	40.86
Bra024057.1-P	Field mustard	cytosol	36.31	40.86
Bra024055.1-P	Field mustard	cytosol	38.22	39.47
CDX72257	Canola	cytosol	35.03	39.43
Bra038818.1-P	Field mustard	cytosol	20.06	38.65
CDX72259	Canola	cytosol	25.16	37.8
CDX68676	Canola	mitochondrion	14.65	34.07
CDY49309	Canola	cytosol	24.84	30.47
CDX68675	Canola	cytosol	16.24	30.36
Bra011205.1-P	Field mustard	cytosol	25.16	28.73
GSMUA_Achr3P06570_001	Banana	cytosol	22.93	22.43
GSMUA_Achr6P30460_001	Banana	cytosol	22.93	22.29
GSMUA_AchrUn_...	Banana	cytosol	22.29	21.81
GSMUA_Achr9P14880_001	Banana	cytosol	21.66	21.18
CDY13002	Canola	nucleus	16.24	20.16

Protein Annotations

EnsemblPlants:GSMUA_Achr4P20480_001	EnsemblPlants:GSMUA_Achr4T20480_001	EnsemblPlantsGene:GSMUA_Achr4G20480_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI00029590DE	UniProt:M0SQL1	MapMan:19.2.2.8.1.4.1	:	:	:

Description

F-box protein SKIP1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20480_001]

Coordinates

chr4:+:21101427..21104113

Molecular Weight (calculated)

35596.6 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.218

Length

314 amino acids

Sequence
(BLAST)

001: MAEVIEEGAR EAEANRDWSE LTPVCLANVL RRLTLEDRWK GAMLVCRSWL AAARDPALFA AVDLEPAFES AGSSRADAAE WWTPAFQRRV DAMLRSAAVW
101: AEGSLREIRV RHCSDEALCF AAERSLNLQT LSIRSSQSVT DRSMFKIATC CPLLGELDIS NCYEISYKSL EMIGQNCANL KILKRNLLNW LDPSQHSGIV
201: PDEYLRACPQ DGDREAMTIG RFMPKLKHVE LRFSKLSVSG LISVSEGCGD LEFLDLFGCA NLTSRGIEQA STNLKNLKTL IRPNFYIPRS MFHTERYGHW
301: RLYDERFQTN VFQI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.