Factsheet for GSMUA_Achr3P06570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P14880_001	Banana	cytosol	85.05	85.05
GSMUA_Achr6P30460_001	Banana	cytosol	80.37	79.88
GSMUA_AchrUn_...	Banana	cytosol	77.57	77.57
TraesCS7B01G083700.1	Wheat	cytosol	63.86	63.47
TraesCS7D01G179800.1	Wheat	cytosol	63.55	63.16
Os02t0757700-01	Rice	cytosol	63.55	62.96
Os06t0219700-01	Rice	cytosol	61.99	62.78
TraesCS7A01G178000.1	Wheat	cytosol	63.24	62.46
Zm00001d052200_P001	Maize	cytosol	63.24	60.6
VIT_00s0391g00040.t01	Wine grape	cytosol	57.63	58.36
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	66.36	58.36
KRH62319	Soybean	cytosol	57.94	57.94
KRH53038	Soybean	cytosol	57.63	57.63
TraesCS6B01G347000.1	Wheat	cytosol	58.57	57.49
VIT_18s0001g06220.t01	Wine grape	cytosol	51.4	56.51
HORVU7Hr1G036660.5	Barley	cytosol	57.94	56.02
PGSC0003DMT400041822	Potato	cytosol	55.76	55.76
TraesCS3B01G550600.1	Wheat	cytosol	54.83	55.7
TraesCS3A01G490000.1	Wheat	cytosol, golgi, nucleus	57.32	54.76
TraesCS6A01G316400.1	Wheat	cytosol	56.39	54.68
Zm00001d018111_P002	Maize	cytosol	59.19	54.44
Solyc11g009050.1.1	Tomato	cytosol	55.45	53.94
AT4G08980.2	Thale cress	cytosol	51.09	51.73
CDX90703	Canola	cytosol	50.78	51.26
CDY05035	Canola	cytosol	50.78	51.26
Bra000662.1-P	Field mustard	cytosol	50.47	50.94
Bra038402.1-P	Field mustard	cytosol	49.84	50.47
HORVU6Hr1G077730.1	Barley	mitochondrion	39.25	49.61
CDY51578	Canola	cytosol	43.93	48.96
CDX75124	Canola	cytosol	43.3	48.77
PGSC0003DMT400043293	Potato	cytosol	31.78	48.11
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	53.58	47.78
HORVU3Hr1G108730.1	Barley	cytosol, golgi, mitochondrion	57.63	47.68
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	57.32	47.06
HORVU7Hr1G122060.1	Barley	cytosol	23.36	41.9
HORVU7Hr1G121910.1	Barley	cytosol	9.66	35.23
HORVU7Hr1G122300.1	Barley	mitochondrion	9.35	30.3
GSMUA_Achr4P20480_001	Banana	cytosol	22.43	22.93

Protein Annotations

EnsemblPlants:GSMUA_Achr3P06570_001	EnsemblPlants:GSMUA_Achr3T06570_001	EnsemblPlantsGene:GSMUA_Achr3G06570_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44841	PANTHER:PTHR44841:SF2	PFAM:PF12937	SEG:seg	SUPFAM:SSF52047	UniParc:UPI000295EFF7
UniProt:M0SCC4	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

F-box protein FBW2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06570_001]

Coordinates

chr3:+:4425128..4427237

Molecular Weight (calculated)

36974.7 Da

IEP (calculated)

4.394

GRAVY (calculated)

-0.318

Length

321 amino acids

Sequence
(BLAST)

001: MADCSEFRAW EELIPDALGL IFRNLPLQEI LTVVPRVCKS WYRAVSGPYC WQEIDIEEWS QRCKPEQLDQ MLQMLITRSG GSFRRLSVSG LLTESMFTFI
101: SENAGSLQRL ELPRSEISDS IVERFAPRFS NITFLDVSYC RKISAHALET FGKNCKFLVG LRRRMHPQEV ADKVCQDEEA YAIANTMPKL HRLELAYLLL
201: TTRGVLEILS RCRDLEYLDL RGCWDVKLDE KYIKEWHPGL KVLGPHVVDC YERSFWEDCS DYSDSSVYSW DSMDDGVDIY DGGSDDDGIW DDDQGLEGLE
301: VRFYGGGFND AFAAFEWPPS P

Best Arabidopsis Sequence Match ( AT4G08980.3 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.