Factsheet for PGSC0003DMT400043293

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041822	Potato	cytosol	82.08	54.21
VIT_00s0391g00040.t01	Wine grape	cytosol	62.74	41.96
HORVU6Hr1G077730.1	Barley	mitochondrion	40.57	33.86
GSMUA_Achr6P30460_001	Banana	cytosol	50.0	32.82
GSMUA_Achr3P06570_001	Banana	cytosol	48.11	31.78
GSMUA_Achr9P14880_001	Banana	cytosol	47.17	31.15
GSMUA_AchrUn_...	Banana	cytosol	47.17	31.15
Os06t0219700-01	Rice	cytosol	45.75	30.6
Os02t0757700-01	Rice	cytosol	45.75	29.94
Zm00001d052200_P001	Maize	cytosol	46.7	29.55
TraesCS7D01G179800.1	Wheat	cytosol	44.34	29.1
TraesCS7B01G083700.1	Wheat	cytosol	44.34	29.1
HORVU7Hr1G122060.1	Barley	cytosol	24.53	29.05
TraesCS7A01G178000.1	Wheat	cytosol	44.34	28.92
TraesCS6B01G347000.1	Wheat	cytosol	44.34	28.75
TraesCS6A01G316400.1	Wheat	cytosol	43.87	28.1
Zm00001d018111_P002	Maize	cytosol	45.28	27.51
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	46.23	26.85
TraesCS3A01G490000.1	Wheat	cytosol, golgi, nucleus	42.45	26.79
TraesCS3B01G550600.1	Wheat	cytosol	39.15	26.27
HORVU7Hr1G036660.5	Barley	cytosol	40.57	25.9
HORVU7Hr1G122300.1	Barley	mitochondrion	11.32	24.24
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	44.34	24.04
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	40.57	23.89
HORVU3Hr1G108730.1	Barley	cytosol, golgi, mitochondrion	43.4	23.71
HORVU7Hr1G121910.1	Barley	cytosol	8.96	21.59
PGSC0003DMT400017590	Potato	cytosol	27.36	18.59
PGSC0003DMT400028954	Potato	cytosol	17.92	12.34

Protein Annotations

EnsemblPlants:PGSC0003DMT400043293	EnsemblPlantsGene:PGSC0003DMG400016805	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44841
PANTHER:PTHR44841:SF2	PGSC:PGSC0003DMG400016805	SEG:seg	SUPFAM:SSF52047	UniParc:UPI000294C1FF	UniProt:M1BED8
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016805]

Coordinates

chr5:-:46456883..46457763

Molecular Weight (calculated)

24081.4 Da

IEP (calculated)

3.952

GRAVY (calculated)

-0.134

Length

212 amino acids

Sequence
(BLAST)

001: MLRLPKSEIG DSVVEQVVGM FTNITFLDVS YCLKIGARAL EAIGKHCKCL TGLRRTMHPL EVIGKLSQDD EALAISSTMP NLKQLEIAYM LVGTRCIIEV
101: LQNCRSLELL DVRGCWNVNL DDDFMKTFHQ LKVVGPIVVD CYDGNGWDNC SDYSSSSGYV RWDFVAGDVD DDDFDEMSDV YWEDDQVIED VEMWFYDDLN
201: VVDSGYDWPQ SP

Best Arabidopsis Sequence Match ( AT4G08980.3 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.