Factsheet for GSMUA_Achr6P30460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	86.07	86.6
GSMUA_Achr3P06570_001	Banana	cytosol	79.88	80.37
GSMUA_Achr9P14880_001	Banana	cytosol	75.23	75.7
Os02t0757700-01	Rice	cytosol	64.71	64.51
TraesCS7B01G083700.1	Wheat	cytosol	63.47	63.47
TraesCS7D01G179800.1	Wheat	cytosol	63.16	63.16
Os06t0219700-01	Rice	cytosol	61.92	63.09
TraesCS7A01G178000.1	Wheat	cytosol	63.47	63.08
Zm00001d052200_P001	Maize	cytosol	65.02	62.69
VIT_00s0391g00040.t01	Wine grape	cytosol	59.75	60.88
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	67.49	59.73
TraesCS6B01G347000.1	Wheat	cytosol	59.75	59.02
PGSC0003DMT400041822	Potato	cytosol	56.66	57.01
KRH62319	Soybean	cytosol	56.66	57.01
VIT_18s0001g06220.t01	Wine grape	cytosol	51.39	56.85
TraesCS3B01G550600.1	Wheat	cytosol	55.42	56.65
TraesCS3A01G490000.1	Wheat	cytosol, golgi, nucleus	58.82	56.55
KRH53038	Soybean	cytosol	56.04	56.39
TraesCS6A01G316400.1	Wheat	cytosol	57.59	56.19
HORVU7Hr1G036660.5	Barley	cytosol	57.28	55.72
Zm00001d018111_P002	Maize	cytosol	60.06	55.59
Solyc11g009050.1.1	Tomato	cytosol	56.66	55.45
Bra000662.1-P	Field mustard	cytosol	52.32	53.14
CDX90703	Canola	cytosol	52.32	53.14
AT4G08980.2	Thale cress	cytosol	52.01	53.0
CDY05035	Canola	cytosol	52.01	52.83
Bra038402.1-P	Field mustard	cytosol	51.08	52.05
HORVU6Hr1G077730.1	Barley	mitochondrion	40.56	51.57
CDX75124	Canola	cytosol	44.89	50.88
CDY51578	Canola	cytosol	45.2	50.69
PGSC0003DMT400043293	Potato	cytosol	32.82	50.0
HORVU3Hr1G108730.1	Barley	cytosol, golgi, mitochondrion	59.44	49.48
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	54.18	48.61
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	58.82	48.59
HORVU7Hr1G122060.1	Barley	cytosol	24.15	43.58
HORVU7Hr1G121910.1	Barley	cytosol	10.53	38.64
HORVU7Hr1G122300.1	Barley	mitochondrion	9.29	30.3
GSMUA_Achr4P20480_001	Banana	cytosol	22.29	22.93

Protein Annotations

EnsemblPlants:GSMUA_Achr6P30460_001	EnsemblPlants:GSMUA_Achr6T30460_001	EnsemblPlantsGene:GSMUA_Achr6G30460_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR44841	PANTHER:PTHR44841:SF2	SEG:seg	SUPFAM:SSF52047	UniParc:UPI000296F2FA
UniProt:M0TBJ1	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

F-box protein FBW2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30460_001]

Coordinates

chr6:+:30453757..30455558

Molecular Weight (calculated)

36880.5 Da

IEP (calculated)

4.368

GRAVY (calculated)

-0.311

Length

323 amino acids

Sequence
(BLAST)

001: MAEGEDGEER AWEELFPDAL GLIFRNLSLQ EILTVIPRVC KSWGRAVSGP YCWQEIDIEE WSQRCKPEQL DQMLHMLIAR SSGSVRRLSV SGLHTESMFS
101: FIADHAGSLQ RLELPRSEIS DSIVEIIAPR LSNITFLDVS YCRKIGARAI EAFGKHCKSL VSLRRRMHPL EVADKVCQDD EAYAIARSMP KLHHLETAYL
201: LLTTRGVLEI LSQCRDLEYL DLRGCWEVKL DDKYLKEWHS GLKVLGPDII DCYEQNCWDE CSDYSDSSVY SWEFMEDGED VYEGVSDNDS IWEAEQGLEG
301: LEVRFYGGGF TDAVTGFDWP PSP

Best Arabidopsis Sequence Match ( AT4G08980.3 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.