Factsheet for VIT_18s0001g06220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0391g00040.t01	Wine grape	cytosol	59.25	54.57
KRH62319	Soybean	cytosol	58.9	53.58
KRH53038	Soybean	cytosol	58.9	53.58
GSMUA_Achr3P06570_001	Banana	cytosol	56.51	51.4
GSMUA_Achr6P30460_001	Banana	cytosol	56.85	51.39
GSMUA_Achr9P14880_001	Banana	cytosol	55.48	50.47
AT4G08980.2	Thale cress	cytosol	54.45	50.16
Bra038402.1-P	Field mustard	cytosol	54.45	50.16
CDY05035	Canola	cytosol	54.45	50.0
GSMUA_AchrUn_...	Banana	cytosol	54.79	49.84
CDX90703	Canola	cytosol	54.11	49.69
Bra000662.1-P	Field mustard	cytosol	53.77	49.37
CDY51578	Canola	cytosol	48.29	48.96
CDX75124	Canola	cytosol	47.6	48.77
TraesCS7D01G179800.1	Wheat	cytosol	53.08	47.99
TraesCS7A01G178000.1	Wheat	cytosol	53.08	47.69
TraesCS7B01G083700.1	Wheat	cytosol	52.74	47.68
HORVU7Hr1G036660.5	Barley	cytosol	53.42	46.99
Os02t0757700-01	Rice	cytosol	52.05	46.91
Os06t0219700-01	Rice	cytosol	50.0	46.06
Zm00001d052200_P001	Maize	cytosol	52.74	45.97
TraesCS6A01G316400.1	Wheat	cytosol	51.03	45.02
TraesCS6B01G347000.1	Wheat	cytosol	49.66	44.34
HORVU7Hr1G122060.1	Barley	cytosol	26.37	43.02
Zm00001d018111_P002	Maize	cytosol	50.68	42.41
TraesCS3B01G550600.1	Wheat	cytosol	45.21	41.77
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	52.05	41.64
TraesCS3A01G490000.1	Wheat	cytosol, golgi, nucleus	46.58	40.48
HORVU6Hr1G077730.1	Barley	mitochondrion	33.9	38.98
HORVU7Hr1G121910.1	Barley	cytosol	11.3	37.5
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	50.0	37.34
HORVU3Hr1G108730.1	Barley	cytosol, golgi, mitochondrion	48.29	36.34
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	44.18	35.83
VIT_07s0031g03110.t01	Wine grape	cytosol	32.53	33.69
HORVU7Hr1G122300.1	Barley	mitochondrion	10.96	32.32
VIT_11s0037g00430.t01	Wine grape	cytosol	24.32	23.05

Protein Annotations

ArrayExpress:VIT_18s0001g06220	EMBL:FN595227	EnsemblPlants:VIT_18s0001g06220.t01	EnsemblPlantsGene:VIT_18s0001g06220	EntrezGene:100247293	EntrezGene:LOC100247293
Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44841	PANTHER:PTHR44841:SF2
ProteinID:CBI19188	ProteinID:CBI19188.3	RefSeq:XP_002285756	RefSeq:XP_002285756.2	SUPFAM:SSF52047	UniParc:UPI0001BE1562
UniProt:E0CRN4	wikigene:100247293	wikigene:LOC100247293	MapMan:19.2.2.8.1.4.6	:	:

Description

No Description!

Coordinates

chr18:+:4684266..4686537

Molecular Weight (calculated)

33719.9 Da

IEP (calculated)

6.108

GRAVY (calculated)

-0.196

Length

292 amino acids

Sequence
(BLAST)

001: MEEESDIRRW DELIPDALGL IFRNLSLREI LTVIPRVCKS WDEAVKGPYC WQEIDIGEWS DQWPEHLDRM LEILIRRSCG SLRKLCVFGL QNDRLLSFIA
101: EHAGSLQTLQ LIRSEISDSL VEEIAGRFST LTFLDVSCCN KMGSRALEAI GKNCKSLVGL CRNMHPLTTA GKLSQDEEAH AIATTMPKLK HLEMAYHLLS
201: TKSVLEILSC CPELELLDLR GCWHVELNVK FLKEKFPKLR VLGPVVVDYC RYYEMNECDD YSDYDETSRV WLIKIYAESS MCAHKLGRRR QR

Best Arabidopsis Sequence Match ( AT4G08980.3 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.