CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052200_P001	Maize	cytosol	80.55	87.76
Os02t0757700-01	Rice	cytosol	75.34	84.88
Zm00001d018111_P002	Maize	cytosol	74.25	77.65
TraesCS6B01G347000.1	Wheat	cytosol	68.22	76.15
TraesCS6A01G316400.1	Wheat	cytosol	64.38	71.0
GSMUA_Achr6P30460_001	Banana	cytosol	59.73	67.49
GSMUA_Achr3P06570_001	Banana	cytosol	58.36	66.36
HORVU6Hr1G077730.1	Barley	mitochondrion	45.75	65.75
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	64.38	65.28
GSMUA_Achr9P14880_001	Banana	cytosol	56.99	64.8
GSMUA_AchrUn_...	Banana	cytosol	56.99	64.8
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	68.77	64.19
VIT_00s0391g00040.t01	Wine grape	cytosol	47.4	54.57
PGSC0003DMT400041822	Potato	cytosol	46.85	53.27
Solyc11g009050.1.1	Tomato	cytosol	47.12	52.12
VIT_18s0001g06220.t01	Wine grape	cytosol	41.64	52.05
KRH62319	Soybean	cytosol	44.93	51.09
KRH53038	Soybean	cytosol	44.66	50.78
AT4G08980.2	Thale cress	cytosol	43.84	50.47
Bra000662.1-P	Field mustard	cytosol	42.74	49.06
CDY05035	Canola	cytosol	42.47	48.74
CDX90703	Canola	cytosol	42.47	48.74
Bra038402.1-P	Field mustard	cytosol	42.19	48.58
CDX75124	Canola	cytosol	36.99	47.37
CDY51578	Canola	cytosol	36.99	46.88
PGSC0003DMT400043293	Potato	cytosol	26.85	46.23
KXG26411	Sorghum	mitochondrion	23.01	20.19
EES14834	Sorghum	cytosol	17.26	19.94

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:C5XYB1	EnsemblPlants:EES07216	ProteinID:EES07216	ProteinID:EES07216.1
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0010608	GO:GO:0010629	GO:GO:0016567	GO:GO:0019538
InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44841	PANTHER:PTHR44841:SF2	EnsemblPlantsGene:SORBI_3004G229100	SUPFAM:SSF52047
UniParc:UPI0001A85939	RefSeq:XP_002454240.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:57876286..57879433

Molecular Weight (calculated)

41386.4 Da

IEP (calculated)

4.641

GRAVY (calculated)

-0.239

Length

365 amino acids

Sequence
(BLAST)

001: MLGKMIFFPF SCFEPKRPKL LRSSPQVSGA AVAFVWKGKE REVMGECEDG KEYRCWEELL PDALGLIFRN LPLQEMLTVV PRVCKSWGRV VAGPYCWQEI
101: DIEEWSQQQS KPDQIGRMVE LLIGRSGGSC RRISVSGLPC DPLFSFIGDN ARALRTLEIP RSEISDSIVE TVAPRLSNVT FLDISSCTKI GARALEAFGK
201: HCKSLVGLRR VMHPIDLVDK VCQHDEAHAI ACSMPKLRHL EMGYMLIATE AVLEILGQCR DLKFLDLRGC WTVDDKFLRE RHPGLRVLGP RVDDCYENSY
301: WEECSDYSDD SSIYSWEFMD DDYYAVGSDD EAIWDDGQGL ENLEVRFYGG GFSESFAGFD WPPSP

Best Arabidopsis Sequence Match ( AT4G08980.3 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.