Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90703 | Canola | cytosol | 98.74 | 98.74 |
| Bra000662.1-P | Field mustard | cytosol | 98.43 | 98.43 |
| CDY51578 | Canola | cytosol | 84.28 | 93.06 |
| CDX75124 | Canola | cytosol | 82.39 | 91.93 |
| AT4G08980.2 | Thale cress | cytosol | 91.19 | 91.48 |
| KRH62319 | Soybean | cytosol | 58.8 | 58.26 |
| KRH53038 | Soybean | cytosol | 58.18 | 57.63 |
| VIT_18s0001g06220.t01 | Wine grape | cytosol | 50.0 | 54.45 |
| GSMUA_Achr6P30460_001 | Banana | cytosol | 52.83 | 52.01 |
| GSMUA_Achr3P06570_001 | Banana | cytosol | 51.26 | 50.78 |
| GSMUA_Achr9P14880_001 | Banana | cytosol | 50.94 | 50.47 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.63 | 50.16 |
| TraesCS7D01G179800.1 | Wheat | cytosol | 48.43 | 47.68 |
| TraesCS7B01G083700.1 | Wheat | cytosol | 48.11 | 47.37 |
| Os06t0219700-01 | Rice | cytosol | 47.17 | 47.32 |
| TraesCS7A01G178000.1 | Wheat | cytosol | 48.11 | 47.08 |
| Os02t0757700-01 | Rice | cytosol | 46.86 | 45.99 |
| TraesCS6B01G347000.1 | Wheat | cytosol | 47.17 | 45.87 |
| Zm00001d052200_P001 | Maize | cytosol | 48.11 | 45.67 |
| TraesCS6A01G316400.1 | Wheat | cytosol | 47.17 | 45.32 |
| HORVU7Hr1G036660.5 | Barley | cytosol | 45.91 | 43.98 |
| TraesCS3B01G550600.1 | Wheat | cytosol | 43.4 | 43.67 |
| EES07216 | Sorghum | cytosol, golgi, mitochondrion, plastid | 48.74 | 42.47 |
| Zm00001d018111_P002 | Maize | cytosol | 46.54 | 42.41 |
| TraesCS3A01G490000.1 | Wheat | cytosol, golgi, nucleus | 44.34 | 41.96 |
| TraesCS6D01G296000.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 47.17 | 38.36 |
| HORVU6Hr1G077730.1 | Barley | mitochondrion | 30.19 | 37.8 |
| HORVU6Hr1G077670.2 | Barley | cytosol, mitochondrion | 42.77 | 37.78 |
| HORVU3Hr1G108730.1 | Barley | cytosol, golgi, mitochondrion | 42.45 | 34.79 |
| HORVU7Hr1G122060.1 | Barley | cytosol | 19.18 | 34.08 |
| CDY39232 | Canola | cytosol | 2.52 | 33.33 |
| HORVU7Hr1G122300.1 | Barley | mitochondrion | 9.12 | 29.29 |
| HORVU7Hr1G121910.1 | Barley | cytosol | 7.23 | 26.14 |
| CDY51272 | Canola | cytosol | 23.27 | 24.67 |
| CDY57461 | Canola | cytosol | 22.96 | 24.33 |
| CDY39231 | Canola | cytosol | 16.04 | 23.61 |
| CDY39233 | Canola | cytosol | 20.13 | 23.02 |
| CDX72258 | Canola | cytosol | 20.13 | 22.78 |
| CDX68681 | Canola | cytosol | 20.13 | 21.99 |
| CDX72259 | Canola | cytosol | 14.15 | 21.53 |
| CDY23249 | Canola | cytosol | 18.55 | 21.45 |
| CDY28199 | Canola | cytosol | 19.5 | 21.45 |
| CDX72257 | Canola | cytosol | 18.24 | 20.79 |
| CDY39226 | Canola | cytosol | 17.92 | 20.43 |
| CDY55615 | Canola | cytosol | 15.41 | 20.25 |
| CDY49309 | Canola | cytosol | 16.04 | 19.92 |
| CDX68676 | Canola | mitochondrion | 7.86 | 18.52 |
| CDX68675 | Canola | cytosol | 9.12 | 17.26 |
| CDY13002 | Canola | nucleus | 11.01 | 13.83 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | EnsemblPlants:CDY05035 | ProteinID:CDY05035 | ProteinID:CDY05035.1 |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00119785001 | InterPro:IPR001611 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PFAM:PF12937 | PFAM:PF13516 |
| PANTHER:PTHR44841 | PANTHER:PTHR44841:SF2 | SUPFAM:SSF52047 | UniParc:UPI0004EF1707 | : | : |
Description
BnaC03g28330D
Coordinates
chrLK031959:+:175727..177601
Molecular Weight (calculated)
36404.1 Da
IEP (calculated)
4.415
GRAVY (calculated)
-0.259
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEDGEFRQ WDELIPDALG LIFSHLPLQE ILTVVPRVCK AWNRAVTGPY CWQEIDIELW SNRCHQSDHL DRMLQMLILR SSGSLRKLSV TGLQNDSIFS
101: FIAQHAGSLK TLKVPRSGLS NSGVVNVAEK LSSLTFLDLS YCCKLGPEAI QAIGRHCKSL IEFSRNMHPL DVASVDSHDD EADAIASTMP KLKRLEIAYH
201: RVSTEGVLKI LSSCVSLEFL ELRGCWDVQL DNKFFKEKFP DMKVLGPRVI GFYDMINDWE DCCSDYFSDG SDYLAWEFLE DGEMGEFYED DFEHGWDDNF
301: YADRVNIDME PHIWPPSP
101: FIAQHAGSLK TLKVPRSGLS NSGVVNVAEK LSSLTFLDLS YCCKLGPEAI QAIGRHCKSL IEFSRNMHPL DVASVDSHDD EADAIASTMP KLKRLEIAYH
201: RVSTEGVLKI LSSCVSLEFL ELRGCWDVQL DNKFFKEKFP DMKVLGPRVI GFYDMINDWE DCCSDYFSDG SDYLAWEFLE DGEMGEFYED DFEHGWDDNF
301: YADRVNIDME PHIWPPSP
001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP
Arabidopsis Description
FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.