CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024055.1-P	Field mustard	cytosol	88.43	62.83
CDX68675	Canola	cytosol	42.13	54.17
CDY39226	Canola	cytosol	67.59	52.33
CDX72257	Canola	cytosol	66.67	51.61
CDY39233	Canola	cytosol	61.11	47.48
CDX72258	Canola	cytosol	61.11	46.98
CDY23249	Canola	cytosol	59.26	46.55
CDY55615	Canola	cytosol	49.54	44.21
CDX68681	Canola	cytosol	59.26	43.99
CDY28199	Canola	cytosol	58.33	43.6
CDX72259	Canola	cytosol	38.43	39.71
CDY49309	Canola	cytosol	44.91	37.89
CDY57461	Canola	cytosol	48.61	35.0
VIT_11s0037g00430.t01	Wine grape	cytosol	49.54	34.74
CDY51272	Canola	cytosol	48.15	34.67
KRH72322	Soybean	cytosol	46.76	33.01
Os08t0269800-01	Rice	cytosol	23.15	32.26
PGSC0003DMT400028954	Potato	cytosol	45.37	31.82
Solyc07g005750.2.1	Tomato	cytosol	44.44	30.77
GSMUA_Achr4P20480_001	Banana	cytosol	41.67	28.66
Zm00001d050166_P001	Maize	cytosol, extracellular	41.2	28.16
EES14834	Sorghum	cytosol	39.35	26.9
CDX68676	Canola	mitochondrion	16.2	25.93
TraesCS1B01G073600.1	Wheat	cytosol	36.57	25.32
TraesCS1D01G057200.3	Wheat	cytosol	36.57	25.24
CDY13002	Canola	nucleus	28.24	24.11
TraesCS1A01G056500.2	Wheat	cytosol	36.11	22.22
HORVU1Hr1G011370.2	Barley	cytosol	37.04	21.74
CDY39232	Canola	cytosol	2.31	20.83
CDX90703	Canola	cytosol	23.61	16.04
CDY05035	Canola	cytosol	23.61	16.04
CDX75124	Canola	cytosol	18.98	14.39
CDY51578	Canola	cytosol	18.98	14.24

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	UniProt:A0A078HNR4	EnsemblPlants:CDY39231	ProteinID:CDY39231
ProteinID:CDY39231.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00067451001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646
PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE3A55

Description

BnaA03g50430DBnaA03g50430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNR4]

Coordinates

chrLK032443:+:258080..258864

Molecular Weight (calculated)

25060.1 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.320

Length

216 amino acids

Sequence
(BLAST)

001: MGSRLRHDWS ELAPECLLDI FSRLSMGQRW NGPMLVCKTW MNLCQDPSFN TVLDLEAEFL SSPESFYWWS PEFEEKVDST IRSAVDQSQG SLTEIRVRHC
101: TDKSLSYVAE RCPNLEVLWV KYCPKVTDVS MRKIALNCPK LKELDILKRN SMQPSEVKRL RHCTYVQYLS FECHGDIEAD TIVRHMSQLK HLELRLFSTL
201: NDSAIVDLCE GCSNLE

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.