Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G073600.1 | Wheat | cytosol | 77.45 | 91.35 |
| TraesCS1D01G057200.3 | Wheat | cytosol | 76.63 | 90.1 |
| TraesCS1A01G056500.2 | Wheat | cytosol | 76.09 | 79.77 |
| EES14834 | Sorghum | cytosol | 64.95 | 75.63 |
| Zm00001d050166_P001 | Maize | cytosol, extracellular | 62.23 | 72.47 |
| GSMUA_Achr4P20480_001 | Banana | cytosol | 57.88 | 67.83 |
| Os08t0269800-01 | Rice | cytosol | 26.09 | 61.94 |
| VIT_11s0037g00430.t01 | Wine grape | cytosol | 44.84 | 53.57 |
| KRH72322 | Soybean | cytosol | 43.75 | 52.61 |
| AT5G57900.1 | Thale cress | cytosol | 39.4 | 48.33 |
| CDY51272 | Canola | cytosol | 39.13 | 48.0 |
| Bra002686.1-P | Field mustard | cytosol | 38.86 | 47.67 |
| CDY57461 | Canola | cytosol | 38.59 | 47.33 |
| PGSC0003DMT400028954 | Potato | cytosol | 38.32 | 45.78 |
| Solyc07g005750.2.1 | Tomato | cytosol | 37.77 | 44.55 |
| CDX68681 | Canola | cytosol | 32.88 | 41.58 |
| CDY23249 | Canola | cytosol | 29.62 | 39.64 |
| Bra010279.1-P | Field mustard | cytosol | 32.07 | 39.2 |
| CDY28199 | Canola | cytosol | 29.89 | 38.06 |
| AT4G30640.1 | Thale cress | cytosol | 30.71 | 37.54 |
| Bra011207.1-P | Field mustard | cytosol | 31.52 | 37.42 |
| CDY39233 | Canola | cytosol | 28.26 | 37.41 |
| Bra024054.1-P | Field mustard | cytosol | 28.26 | 37.41 |
| CDX72258 | Canola | cytosol | 28.53 | 37.37 |
| CDY55615 | Canola | cytosol | 24.46 | 37.19 |
| CDY39231 | Canola | cytosol | 21.74 | 37.04 |
| Bra038818.1-P | Field mustard | cytosol | 16.3 | 36.81 |
| Bra024057.1-P | Field mustard | cytosol | 27.17 | 35.84 |
| CDY39226 | Canola | cytosol | 27.17 | 35.84 |
| CDX72257 | Canola | cytosol | 26.9 | 35.48 |
| CDX72259 | Canola | cytosol | 20.11 | 35.41 |
| Bra024055.1-P | Field mustard | cytosol | 28.8 | 34.87 |
| CDY49309 | Canola | cytosol | 21.2 | 30.47 |
| CDX68676 | Canola | mitochondrion | 10.87 | 29.63 |
| CDX68675 | Canola | cytosol | 12.77 | 27.98 |
| Bra011205.1-P | Field mustard | cytosol | 20.38 | 27.27 |
| HORVU7Hr1G121910.1 | Barley | cytosol | 5.16 | 21.59 |
| HORVU7Hr1G122060.1 | Barley | cytosol | 10.33 | 21.23 |
| HORVU7Hr1G036660.5 | Barley | cytosol | 17.66 | 19.58 |
| HORVU7Hr1G122300.1 | Barley | mitochondrion | 5.16 | 19.19 |
| CDY13002 | Canola | nucleus | 13.04 | 18.97 |
| HORVU6Hr1G077730.1 | Barley | mitochondrion | 12.77 | 18.5 |
| HORVU3Hr1G108730.1 | Barley | cytosol, golgi, mitochondrion | 17.93 | 17.01 |
| HORVU6Hr1G077670.2 | Barley | cytosol, mitochondrion | 14.95 | 15.28 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G011370.2 | EnsemblPlantsGene:HORVU1Hr1G011370 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44078 | PFAM:PF12937 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI000B47D58E | UniProt:A0A287EME2 | MapMan:19.2.2.8.1.4.1 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:27435417..27438060
Molecular Weight (calculated)
40695.4 Da
IEP (calculated)
5.745
GRAVY (calculated)
-0.269
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: RNPPPEHVAT GARCRQHTTL VESGTVKMAN IYGAFYLLPD PQREGNPKRE ASGGEMEMAT GGEAAPEEGE RRDWADLTPV CLAEAFSRLE PEDLWRGAMA
101: CCRSWREAAR SRPALFAALD LEPAFEAIGA DAAEWWTPAF QRRVDAMLRS AASLAAGGLR EARVRHCSDD ALAFAAKSSP QLSILSIRSS PGVTDRSMLT
201: VASCCPILTE LDISYCYEVS YKSLEAIGQS CPNLTVLKRS IFNWLDSSEH AQTVPAEYLR ACPQDGDREA MVISRSMPKL KQLVLRFAKL SGVGLNSITE
301: GCKELEVLDL FGCANLTSRG IEQAAANLKN LETLVKPNLY IPRSAFHMER YGHWQLYDER FQTNVFQI
101: CCRSWREAAR SRPALFAALD LEPAFEAIGA DAAEWWTPAF QRRVDAMLRS AASLAAGGLR EARVRHCSDD ALAFAAKSSP QLSILSIRSS PGVTDRSMLT
201: VASCCPILTE LDISYCYEVS YKSLEAIGQS CPNLTVLKRS IFNWLDSSEH AQTVPAEYLR ACPQDGDREA MVISRSMPKL KQLVLRFAKL SGVGLNSITE
301: GCKELEVLDL FGCANLTSRG IEQAAANLKN LETLVKPNLY IPRSAFHMER YGHWQLYDER FQTNVFQI
001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI
Arabidopsis Description
SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.