Factsheet for TraesCS1B01G073600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G057200.3	Wheat	cytosol	94.23	93.93
TraesCS1A01G056500.2	Wheat	cytosol	92.63	82.34
HORVU1Hr1G011370.2	Barley	cytosol	91.35	77.45
EES14834	Sorghum	cytosol	76.92	75.95
Zm00001d050166_P001	Maize	cytosol, extracellular	74.36	73.42
GSMUA_Achr4P20480_001	Banana	cytosol	67.31	66.88
Os08t0269800-01	Rice	cytosol	31.73	63.87
VIT_11s0037g00430.t01	Wine grape	cytosol	53.85	54.55
KRH72322	Soybean	cytosol	52.24	53.27
AT5G57900.1	Thale cress	cytosol	45.51	47.33
CDY51272	Canola	cytosol	45.19	47.0
Bra002686.1-P	Field mustard	cytosol	44.87	46.67
PGSC0003DMT400028954	Potato	cytosol	45.83	46.43
CDY57461	Canola	cytosol	44.55	46.33
Solyc07g005750.2.1	Tomato	cytosol	45.19	45.19
CDX68681	Canola	cytosol	37.82	40.55
CDY23249	Canola	cytosol	34.29	38.91
AT4G30640.1	Thale cress	cytosol	37.18	38.54
Bra010279.1-P	Field mustard	cytosol	37.18	38.54
CDY39233	Canola	cytosol	33.65	37.77
Bra024054.1-P	Field mustard	cytosol	33.65	37.77
CDX72258	Canola	cytosol	33.97	37.72
CDY28199	Canola	cytosol	34.94	37.72
CDY55615	Canola	cytosol	28.85	37.19
Bra011207.1-P	Field mustard	cytosol	36.86	37.1
CDY39231	Canola	cytosol	25.32	36.57
CDX72259	Canola	cytosol	24.04	35.89
Bra024057.1-P	Field mustard	cytosol	32.05	35.84
CDY39226	Canola	cytosol	32.05	35.84
CDX72257	Canola	cytosol	31.73	35.48
Bra024055.1-P	Field mustard	cytosol	34.29	35.2
Bra038818.1-P	Field mustard	cytosol	17.95	34.36
CDX68676	Canola	mitochondrion	13.46	31.11
CDY49309	Canola	cytosol	23.72	28.91
CDX68675	Canola	cytosol	14.1	26.19
Bra011205.1-P	Field mustard	cytosol	23.08	26.18
TraesCS7B01G083700.1	Wheat	cytosol	20.51	19.81
TraesCS6B01G347000.1	Wheat	cytosol	20.19	19.27
CDY13002	Canola	nucleus	15.38	18.97
TraesCS2B01G334900.1	Wheat	cytosol, nucleus, plastid	25.0	18.89
TraesCS3B01G550600.1	Wheat	cytosol	18.59	18.35

Protein Annotations

EnsemblPlants:TraesCS1B01G073600.1	EnsemblPlantsGene:TraesCS1B01G073600	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078
SEG:seg	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.1	:

Description

No Description!

Coordinates

chr1B:-:57437484..57439174

Molecular Weight (calculated)

34395.1 Da

IEP (calculated)

5.256

GRAVY (calculated)

-0.070

Length

312 amino acids

Sequence
(BLAST)

001: MATGGEAAPE GEEGERDWAD LTPVCLAEAF SRLGLEDLWR GAMACCRSWR AAARSRPALF AALDLGPAFE AVGADAAEWW TPAFQRRVDA MLRSAASLAA
101: GELREVRVRH CSDDALAFAA KSSPQLSILS IQSCPGVTDR SMLTVASCCP MLTELDISYC YEVSYKSLEV IGQSCPNLVV LKRSIFNWLD SSEHARTVPA
201: EYLRACPQDG DREAIAISRS MPKLKQLVLR FAKLSGVGLN SIAEGCKELE VLDLFGCANL TSRGIEQAAA NLKNLETLVK PNFYIPRSAF HMERYGHWQL
301: YDERFQTNVF QI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.