Factsheet for Solyc07g005750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028954	Potato	cytosol	89.1	90.26
KRH72322	Soybean	cytosol	55.77	56.86
VIT_11s0037g00430.t01	Wine grape	cytosol	55.77	56.49
AT5G57900.1	Thale cress	cytosol	49.68	51.67
CDY57461	Canola	cytosol	48.72	50.67
Bra002686.1-P	Field mustard	cytosol	48.4	50.33
CDY51272	Canola	cytosol	48.4	50.33
GSMUA_Achr4P20480_001	Banana	cytosol	50.32	50.0
Bra024054.1-P	Field mustard	cytosol	42.31	47.48
CDX72258	Canola	cytosol	42.63	47.33
CDY39233	Canola	cytosol	41.99	47.12
TraesCS1B01G073600.1	Wheat	cytosol	45.19	45.19
Bra038818.1-P	Field mustard	cytosol	23.4	44.79
TraesCS1D01G057200.3	Wheat	cytosol	44.87	44.73
CDY39231	Canola	cytosol	30.77	44.44
Zm00001d050166_P001	Maize	cytosol, extracellular	44.55	43.99
EES14834	Sorghum	cytosol	44.55	43.99
CDX68681	Canola	cytosol	41.03	43.99
CDY23249	Canola	cytosol	38.46	43.64
Bra010279.1-P	Field mustard	cytosol	41.03	42.52
CDY39226	Canola	cytosol	37.82	42.29
Bra024057.1-P	Field mustard	cytosol	37.82	42.29
CDY28199	Canola	cytosol	38.78	41.87
AT4G30640.1	Thale cress	cytosol	40.38	41.86
CDX72257	Canola	cytosol	37.18	41.58
Bra011207.1-P	Field mustard	cytosol	40.38	40.65
CDY55615	Canola	cytosol	31.41	40.5
Bra024055.1-P	Field mustard	cytosol	39.42	40.46
TraesCS1A01G056500.2	Wheat	cytosol	44.87	39.89
HORVU1Hr1G011370.2	Barley	cytosol	44.55	37.77
CDX72259	Canola	cytosol	25.0	37.32
CDY49309	Canola	cytosol	29.81	36.33
CDX68676	Canola	mitochondrion	15.71	36.3
CDX68675	Canola	cytosol	18.59	34.52
Os08t0269800-01	Rice	cytosol	15.71	31.61
Bra011205.1-P	Field mustard	cytosol	27.24	30.91
CDY13002	Canola	nucleus	19.23	23.72
Solyc01g088240.2.1	Tomato	cytosol	22.12	22.48
Solyc11g009050.1.1	Tomato	cytosol	22.44	21.21

Protein Annotations

EnsemblPlants:Solyc07g005750.2.1	EnsemblPlantsGene:Solyc07g005750.2	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	PFAM:PF00646	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000276BFC9	UniProt:K4CB46	MapMan:19.2.2.8.1.4.1	:

Description

No Description!

Coordinates

chr7:+:602113..605194

Molecular Weight (calculated)

35607.6 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.308

Length

312 amino acids

Sequence
(BLAST)

001: MTEEEEKTKS VQIHNWAELT QLCLVNILSR LSIEDRWRGA MFVCKSWLQA CKDPNLNSVI DLEAQFIESV TESSPLSSTR YWNREFESKI DSMVQSVVIW
101: SDGSLNFVRV RHCSDRSIAL IAERSPNLQV LSIQRCPHVT DETISKIASG CPLLRKLDIS FCHQISHKSI ALIGQHCRNL QILRRNLMTQ VNPSQQEPFV
201: PREYVDTCPQ DGDSEAAAIG KFMAQLVQLE LQFSKLTNKG LALISEGCIN LEHLDLFGCT NVTSRDIANA SSNLKQLKTL KKPTQLCLES QTERYGHWQL
301: YDDRFQTDSF RI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.