CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39231	Canola	cytosol	54.17	42.13
Bra011205.1-P	Field mustard	cytosol	60.12	36.73
CDY39226	Canola	cytosol	55.36	33.33
CDX72257	Canola	cytosol	55.36	33.33
CDY55615	Canola	cytosol	46.43	32.23
CDY23249	Canola	cytosol	47.62	29.09
CDY39233	Canola	cytosol	47.02	28.42
CDX68681	Canola	cytosol	48.81	28.18
CDY49309	Canola	cytosol	42.26	27.73
CDY28199	Canola	cytosol	47.62	27.68
CDX72258	Canola	cytosol	45.83	27.4
Os08t0269800-01	Rice	cytosol	23.81	25.81
CDY57461	Canola	cytosol	37.5	21.0
CDY51272	Canola	cytosol	36.9	20.67
VIT_11s0037g00430.t01	Wine grape	cytosol	37.5	20.45
KRH72322	Soybean	cytosol	35.12	19.28
Solyc07g005750.2.1	Tomato	cytosol	34.52	18.59
CDX72259	Canola	cytosol	22.62	18.18
PGSC0003DMT400028954	Potato	cytosol	32.14	17.53
CDY13002	Canola	nucleus	25.0	16.6
GSMUA_Achr4P20480_001	Banana	cytosol	30.36	16.24
TraesCS1D01G057200.3	Wheat	cytosol	27.38	14.7
TraesCS1B01G073600.1	Wheat	cytosol	26.19	14.1
Zm00001d050166_P001	Maize	cytosol, extracellular	26.19	13.92
EES14834	Sorghum	cytosol	25.6	13.61
TraesCS1A01G056500.2	Wheat	cytosol	26.79	12.82
HORVU1Hr1G011370.2	Barley	cytosol	27.98	12.77
CDY39232	Canola	cytosol	1.79	12.5
CDY05035	Canola	cytosol	17.26	9.12
CDX90703	Canola	cytosol	17.26	9.12
CDY51578	Canola	cytosol	13.1	7.64
CDX75124	Canola	cytosol	12.5	7.37
CDX68676	Canola	mitochondrion	3.57	4.44

Protein Annotations

EnsemblPlants:CDX68675	EnsemblPlantsGene:GSBRNA2T00130352001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	PFAM:PF12937
ProteinID:CDX68675	ProteinID:CDX68675.1	SUPFAM:SSF81383	UniParc:UPI0004EE7963	MapMan:19.2.2.8.1.4.1	:

Description

BnaC01g07780D

Coordinates

chrLK031789:+:722757..724594

Molecular Weight (calculated)

19095.9 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.261

Length

168 amino acids

Sequence
(BLAST)

001: MRKIASNCTK LTQLDISCSY EIYGQCIEIM GSRVHPEWTE LPPECLLGIF SRLTMGQRRN GPMLVCKTWT NLCQDPSLNT ILDLEAEFLS SPDCIYWWSP
101: EFEEKVNSTI RSVVDQSEGG LKEIRVRHCT NQSLSYVAER CPNLEVLGVT YSPKVTVESM GEDSLKLH

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.