CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011207.1-P	Field mustard	cytosol	89.62	83.55
CDX68681	Canola	cytosol	84.08	83.51
CDY23249	Canola	cytosol	63.32	66.55
AT4G30640.1	Thale cress	cytosol	65.74	63.12
CDY55615	Canola	cytosol	52.6	62.81
CDY39231	Canola	cytosol	43.6	58.33
CDY39233	Canola	cytosol	51.9	53.96
CDX72258	Canola	cytosol	52.25	53.74
CDY39226	Canola	cytosol	50.17	51.97
CDX72257	Canola	cytosol	49.48	51.25
CDX68675	Canola	cytosol	27.68	47.62
VIT_11s0037g00430.t01	Wine grape	cytosol	50.52	47.4
CDY51272	Canola	cytosol	48.79	47.0
CDY57461	Canola	cytosol	47.4	45.67
KRH72322	Soybean	cytosol	48.1	45.42
CDX72259	Canola	cytosol	32.18	44.5
PGSC0003DMT400028954	Potato	cytosol	43.6	40.91
GSMUA_Achr4P20480_001	Banana	cytosol	43.6	40.13
Solyc07g005750.2.1	Tomato	cytosol	41.87	38.78
CDY49309	Canola	cytosol	32.53	36.72
CDX68676	Canola	mitochondrion	16.61	35.56
Zm00001d050166_P001	Maize	cytosol, extracellular	38.75	35.44
TraesCS1D01G057200.3	Wheat	cytosol	38.06	35.14
EES14834	Sorghum	cytosol	38.41	35.13
TraesCS1B01G073600.1	Wheat	cytosol	37.72	34.94
Os08t0269800-01	Rice	cytosol	18.34	34.19
TraesCS1A01G056500.2	Wheat	cytosol	37.37	30.77
HORVU1Hr1G011370.2	Barley	cytosol	38.06	29.89
CDY13002	Canola	nucleus	25.61	29.25
CDY39232	Canola	cytosol	1.73	20.83
CDY05035	Canola	cytosol	21.45	19.5
CDX90703	Canola	cytosol	21.45	19.5
CDX75124	Canola	cytosol	19.03	19.3
CDY51578	Canola	cytosol	18.69	18.75

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	UniProt:A0A078GSM3	EnsemblPlants:CDY28199	ProteinID:CDY28199
ProteinID:CDY28199.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00039920001
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516
PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE6EF4

Description

BnaA01g06500DBnaA01g06500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSM3]

Coordinates

chrLK032216:+:237387..238598

Molecular Weight (calculated)

33089.0 Da

IEP (calculated)

5.858

GRAVY (calculated)

-0.083

Length

289 amino acids

Sequence
(BLAST)

001: MEVNHGGGMA LTLGPNWAEM TRECLLDIFS RLSQEERWMG PMLVCKTWMN TCHEPSLNTI FDLETRFQSF PESINWWIPE FEDKVDAFLR SVVDWSEGGL
101: TEIRVRHCTD RSLSYVAERC PKLEVLWINS CPHVTDASMA KIASNCPNLR ELDVSYSYCI SHEALSMLGR HCPNLEILKR NLFPRQGPNV SIIVAPVDYI
201: LAFPRYGNIE AQIIGRHMPR LKHLELQYCT LTVKGLTSVC KGCSDLEYLD LSGSRSLTST GRLIFYSFQI EENNGDAKLY LFMVPFVLF

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.