CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72257	Canola	cytosol	56.3	27.24
CDY39226	Canola	cytosol	54.81	26.52
CDX72258	Canola	cytosol	50.37	24.2
CDY39233	Canola	cytosol	49.63	24.1
CDX72259	Canola	cytosol	31.85	20.57
CDX68681	Canola	cytosol	43.7	20.27
VIT_11s0037g00430.t01	Wine grape	cytosol	42.96	18.83
CDY57461	Canola	cytosol	40.74	18.33
CDY51272	Canola	cytosol	40.0	18.0
KRH72322	Soybean	cytosol	40.74	17.97
CDY28199	Canola	cytosol	35.56	16.61
CDY39231	Canola	cytosol	25.93	16.2
Solyc07g005750.2.1	Tomato	cytosol	36.3	15.71
PGSC0003DMT400028954	Potato	cytosol	34.81	15.26
GSMUA_Achr4P20480_001	Banana	cytosol	34.07	14.65
EES14834	Sorghum	cytosol	34.07	14.56
Zm00001d050166_P001	Maize	cytosol, extracellular	34.07	14.56
CDY23249	Canola	cytosol	28.15	13.82
TraesCS1B01G073600.1	Wheat	cytosol	31.11	13.46
TraesCS1D01G057200.3	Wheat	cytosol	31.11	13.42
CDY39232	Canola	cytosol	2.22	12.5
TraesCS1A01G056500.2	Wheat	cytosol	30.37	11.68
CDY55615	Canola	cytosol	20.74	11.57
HORVU1Hr1G011370.2	Barley	cytosol	29.63	10.87
CDY51578	Canola	cytosol	18.52	8.68
CDX75124	Canola	cytosol	17.04	8.07
CDY05035	Canola	cytosol	18.52	7.86
CDX90703	Canola	cytosol	18.52	7.86
Bra011205.1-P	Field mustard	cytosol	14.07	6.91
CDY49309	Canola	cytosol	12.59	6.64
Os08t0269800-01	Rice	cytosol	5.19	4.52
CDY13002	Canola	nucleus	8.15	4.35
CDX68675	Canola	cytosol	4.44	3.57

Protein Annotations

EnsemblPlants:CDX68676	EnsemblPlantsGene:GSBRNA2T00130353001	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44001	ProteinID:CDX68676	ProteinID:CDX68676.1	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0004EE88CE
MapMan:35.1	:	:	:	:	:

Description

BnaC01g07770D

Coordinates

chrLK031789:+:729950..730427

Molecular Weight (calculated)

15393.0 Da

IEP (calculated)

9.081

GRAVY (calculated)

-0.044

Length

135 amino acids

Sequence
(BLAST)

001: MCYDGRVTSK RVSSLIRLGT NCKNIHTLKR NLMQTSEILR LFMHCTYVHG LCFETSGNID VFAIRSYMSQ LKHLELRFST VTDKALPFLC KGCPNLEYLD
101: LVGCRYLTSD GVTNGISSLK NLKEIKKPEF TALLY

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.