CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0037g00430.t01	Wine grape	cytosol	70.26	69.81
AT5G57900.1	Thale cress	cytosol	57.19	58.33
PGSC0003DMT400028954	Potato	cytosol	56.86	56.49
GSMUA_Achr4P20480_001	Banana	cytosol	57.52	56.05
CDY57461	Canola	cytosol	54.9	56.0
Solyc07g005750.2.1	Tomato	cytosol	56.86	55.77
CDY51272	Canola	cytosol	54.25	55.33
Bra002686.1-P	Field mustard	cytosol	53.92	55.0
TraesCS1D01G057200.3	Wheat	cytosol	53.59	52.4
TraesCS1B01G073600.1	Wheat	cytosol	53.27	52.24
CDX68681	Canola	cytosol	48.37	50.86
EES14834	Sorghum	cytosol	52.29	50.63
CDY23249	Canola	cytosol	45.1	50.18
Zm00001d050166_P001	Maize	cytosol, extracellular	51.63	50.0
AT4G30640.1	Thale cress	cytosol	49.02	49.83
Bra010279.1-P	Field mustard	cytosol	49.02	49.83
CDY55615	Canola	cytosol	39.22	49.59
Bra038818.1-P	Field mustard	cytosol	25.82	48.47
CDY28199	Canola	cytosol	45.42	48.1
Bra011207.1-P	Field mustard	cytosol	48.04	47.42
CDY39226	Canola	cytosol	43.14	47.31
Bra024057.1-P	Field mustard	cytosol	43.14	47.31
CDY39231	Canola	cytosol	33.01	46.76
CDX72257	Canola	cytosol	42.48	46.59
Bra024054.1-P	Field mustard	cytosol	42.16	46.4
CDY39233	Canola	cytosol	41.83	46.04
CDX72258	Canola	cytosol	42.16	45.91
TraesCS1A01G056500.2	Wheat	cytosol	51.96	45.3
HORVU1Hr1G011370.2	Barley	cytosol	52.61	43.75
Bra024055.1-P	Field mustard	cytosol	41.83	42.11
CDX68676	Canola	mitochondrion	17.97	40.74
CDX72259	Canola	cytosol	27.78	40.67
CDY49309	Canola	cytosol	32.35	38.67
CDX68675	Canola	cytosol	19.28	35.12
Os08t0269800-01	Rice	cytosol	16.67	32.9
Bra011205.1-P	Field mustard	cytosol	28.43	31.64
CDY13002	Canola	nucleus	21.57	26.09
KRH62319	Soybean	cytosol	22.88	21.81
KRH53038	Soybean	cytosol	22.55	21.5

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100787875	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EMBL:ACUP02001201	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_02G205200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JGR1
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH72322	ProteinID:KRH72322	ProteinID:KRH72322.1
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44078
PANTHER:PTHR44078:SF5	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002337558	:

Description

hypothetical protein

Coordinates

chr2:+:39035339..39037256

Molecular Weight (calculated)

35209.8 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.335

Length

306 amino acids

Sequence
(BLAST)

001: MKTETEPNET ESDWSELTRE CLINILSRLS VEDRWRGTML VCKSWFSVFK EPSLHFVFNL DPQFDSPTES TRWWTPEFEA KIDNMLRSVV EWAQSSLTHI
101: RIRHCSDRSL ALVAQSCPNL EVLFIRSCPR VTDDSISRIA LSCPKLRELD ISYCYEITHE SLVLIGRNCP NLKVLKRNLM NWLDPSQHRG IVPDDYLNAC
201: PQDGDDEAAA IANSMPGLEQ LEIRFSKLTA KGLNSICQGC PNLEFLDLSG CANLTSRDIA NASSSLVHLK EIKKPNFYIP RSVFHTERYG HWSLYDERFQ
301: TDIFQI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.