Factsheet for PGSC0003DMT400028954

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005750.2.1	Tomato	cytosol	90.26	89.1
VIT_11s0037g00430.t01	Wine grape	cytosol	57.14	57.14
KRH72322	Soybean	cytosol	56.49	56.86
AT5G57900.1	Thale cress	cytosol	50.65	52.0
CDY57461	Canola	cytosol	49.03	50.33
GSMUA_Achr4P20480_001	Banana	cytosol	51.3	50.32
Bra002686.1-P	Field mustard	cytosol	48.7	50.0
CDY51272	Canola	cytosol	48.7	50.0
Bra024054.1-P	Field mustard	cytosol	42.53	47.12
CDX72258	Canola	cytosol	42.86	46.98
CDY39233	Canola	cytosol	42.21	46.76
TraesCS1B01G073600.1	Wheat	cytosol	46.43	45.83
CDY39231	Canola	cytosol	31.82	45.37
TraesCS1D01G057200.3	Wheat	cytosol	46.1	45.37
CDX68681	Canola	cytosol	42.86	45.36
CDY23249	Canola	cytosol	40.26	45.09
EES14834	Sorghum	cytosol	46.1	44.94
Zm00001d050166_P001	Maize	cytosol, extracellular	45.45	44.3
Bra038818.1-P	Field mustard	cytosol	23.38	44.17
CDY28199	Canola	cytosol	40.91	43.6
Bra010279.1-P	Field mustard	cytosol	42.21	43.19
AT4G30640.1	Thale cress	cytosol	41.56	42.52
CDY39226	Canola	cytosol	38.31	42.29
Bra024057.1-P	Field mustard	cytosol	38.31	42.29
Bra011207.1-P	Field mustard	cytosol	42.53	42.26
CDX72257	Canola	cytosol	37.99	41.94
CDY55615	Canola	cytosol	32.79	41.74
Bra024055.1-P	Field mustard	cytosol	39.94	40.46
TraesCS1A01G056500.2	Wheat	cytosol	46.1	40.46
CDX72259	Canola	cytosol	26.3	38.76
HORVU1Hr1G011370.2	Barley	cytosol	45.78	38.32
CDY49309	Canola	cytosol	29.87	35.94
CDX68676	Canola	mitochondrion	15.26	34.81
Os08t0269800-01	Rice	cytosol	16.23	32.26
CDX68675	Canola	cytosol	17.53	32.14
Bra011205.1-P	Field mustard	cytosol	26.62	29.82
CDY13002	Canola	nucleus	19.81	24.11
PGSC0003DMT400041822	Potato	cytosol	23.7	22.74
PGSC0003DMT400017590	Potato	cytosol	22.73	22.44
PGSC0003DMT400043293	Potato	cytosol	12.34	17.92

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102582484	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M1ARZ1	PFAM:PF00646	EnsemblPlantsGene:PGSC0003DMG400011146	PGSC:PGSC0003DMG400011146	EnsemblPlants:PGSC0003DMT400028954
PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002948056
RefSeq:XP_006343634.1	:	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011146]

Coordinates

chr7:+:991968..995566

Molecular Weight (calculated)

35287.3 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.238

Length

308 amino acids

Sequence
(BLAST)

001: MAEEEEKTKS VQIHNWAELT QLCLVNIISH LSIEDRWRGA MFVCKSWLQA CKDPNLNSVI DLEAQFIQSV AESSSTRYWN REFESKIDSM VRSVVIWSDG
101: SLNFVRVRHC SDRSIALIAE RSLNLQVLSI QRCPHVTDET MSKIASGCPL LRELDISFCY QISHKSLALI GQHCPNLRIL RRNLMTQVNP SQQEPFVPRE
201: YVDTCPQDGD SEAAAIGKFM PQLVQLELQF SKLTNKGLAL ISEGCINLEH LDIFGCTNVT SLDIANASSN MKQLKTLKKP HLCLESQTEW YGHWQLYDDR
301: FQTDFFRI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.