CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010279.1-P	Field mustard	cytosol	98.91	90.37
CDY55615	Canola	cytosol	73.45	83.47
CDX68681	Canola	cytosol	68.36	64.6
CDY28199	Canola	cytosol	66.55	63.32
CDY39231	Canola	cytosol	46.55	59.26
CDY39233	Canola	cytosol	51.64	51.08
CDY39226	Canola	cytosol	51.27	50.54
CDX72258	Canola	cytosol	51.27	50.18
CDX72257	Canola	cytosol	50.18	49.46
CDX68675	Canola	cytosol	29.09	47.62
VIT_11s0037g00430.t01	Wine grape	cytosol	51.64	46.1
KRH72322	Soybean	cytosol	50.18	45.1
CDY57461	Canola	cytosol	49.09	45.0
CDY51272	Canola	cytosol	49.09	45.0
CDX72259	Canola	cytosol	32.0	42.11
CDY49309	Canola	cytosol	38.55	41.41
PGSC0003DMT400028954	Potato	cytosol	45.09	40.26
Solyc07g005750.2.1	Tomato	cytosol	43.64	38.46
GSMUA_Achr4P20480_001	Banana	cytosol	43.64	38.22
Zm00001d050166_P001	Maize	cytosol, extracellular	41.09	35.76
EES14834	Sorghum	cytosol	41.09	35.76
TraesCS1B01G073600.1	Wheat	cytosol	38.91	34.29
TraesCS1D01G057200.3	Wheat	cytosol	38.91	34.19
Os08t0269800-01	Rice	cytosol	17.45	30.97
TraesCS1A01G056500.2	Wheat	cytosol	38.55	30.2
HORVU1Hr1G011370.2	Barley	cytosol	39.64	29.62
CDX68676	Canola	mitochondrion	13.82	28.15
CDY13002	Canola	nucleus	24.73	26.88
CDX90703	Canola	cytosol	21.45	18.55
CDY05035	Canola	cytosol	21.45	18.55
CDX75124	Canola	cytosol	17.82	17.19
CDY51578	Canola	cytosol	17.82	17.01
CDY39232	Canola	cytosol	1.45	16.67

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	UniProt:A0A078GD19	EnsemblPlants:CDY23249	ProteinID:CDY23249
ProteinID:CDY23249.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00021808001
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EEAB89	:	:	:

Description

BnaA08g12970DBnaA08g12970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GD19]

Coordinates

chrLK032142:+:70818..72381

Molecular Weight (calculated)

31613.2 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.314

Length

275 amino acids

Sequence
(BLAST)

001: MEVNDEGEKL KMGSLLSPGW ADLTRECLID IFSRLSVDQR WIGPMLVCKT WMNICHDPLF NTIFDLETRF QSFPESINWW NPEFEDKVDS FLRSVVDRSE
101: GGLTEIRVRH CTDRSLSYAA ERCPKLEVLW IKSCPNVTDA SMTKIASNCP NLKELDMSYS YGISHESLVM LGRNCNNLKI LKRNLYPRLD PNMPTIIAPL
201: DYLATYPKHA NVEAEVIGRH MPQLKQLEFR YTTLTAKGLA LVGEGCSDLE EINKPNFMFP MAILRMSRPD HPRYG

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.