CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024057.1-P	Field mustard	cytosol	99.64	99.64
CDX72257	Canola	cytosol	96.42	96.42
CDY39231	Canola	cytosol	52.33	67.59
CDY39233	Canola	cytosol	61.29	61.51
CDX72258	Canola	cytosol	61.65	61.21
CDX68675	Canola	cytosol	33.33	55.36
CDX68676	Canola	mitochondrion	26.52	54.81
CDX68681	Canola	cytosol	54.84	52.58
CDY23249	Canola	cytosol	50.54	51.27
CDX72259	Canola	cytosol	38.35	51.2
CDY55615	Canola	cytosol	43.73	50.41
CDY28199	Canola	cytosol	51.97	50.17
VIT_11s0037g00430.t01	Wine grape	cytosol	48.03	43.51
KRH72322	Soybean	cytosol	47.31	43.14
CDY57461	Canola	cytosol	46.24	43.0
CDY51272	Canola	cytosol	45.88	42.67
PGSC0003DMT400028954	Potato	cytosol	42.29	38.31
CDY49309	Canola	cytosol	34.77	37.89
Solyc07g005750.2.1	Tomato	cytosol	42.29	37.82
GSMUA_Achr4P20480_001	Banana	cytosol	40.86	36.31
Zm00001d050166_P001	Maize	cytosol, extracellular	40.86	36.08
EES14834	Sorghum	cytosol	37.99	33.54
TraesCS1D01G057200.3	Wheat	cytosol	36.56	32.59
TraesCS1B01G073600.1	Wheat	cytosol	35.84	32.05
Os08t0269800-01	Rice	cytosol	16.49	29.68
TraesCS1A01G056500.2	Wheat	cytosol	36.56	29.06
CDY13002	Canola	nucleus	24.73	27.27
HORVU1Hr1G011370.2	Barley	cytosol	35.84	27.17
CDY39232	Canola	cytosol	1.79	20.83
CDY05035	Canola	cytosol	20.43	17.92
CDX90703	Canola	cytosol	20.43	17.92
CDX75124	Canola	cytosol	18.28	17.89
CDY51578	Canola	cytosol	18.28	17.71

Protein Annotations

EnsemblPlants:CDY39226	EnsemblPlantsGene:GSBRNA2T00067446001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	ProteinID:CDY39226	ProteinID:CDY39226.1	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0004EE4126	UniProt:A0A078HNR2	MapMan:19.2.2.8.1.4.1	:	:

Description

BnaA03g50380DBnaA03g50380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNR2]

Coordinates

chrLK032443:+:246100..248062

Molecular Weight (calculated)

32105.8 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.306

Length

279 amino acids

Sequence
(BLAST)

001: MGSTLHPDWT ELIRECLIDI FSRLSMGKRW NGPMLVCKKW MNVCQDTSLN TVLDLESEFL TSTNTTYWWS PEFEEKVDTT IRSVVDQSQG ELRELRVRHC
101: TNQSLSYVAE RCPNLEVLWV KYSPKVTIES MKKIALNCPK LKELDISCSY EISCECMELV GTNCKNLQVL KRNLMQPSEV ARLRRYAYVK KQYLSVETLG
201: NVDAYTIGRH MHQLKHLELR NSTLTDKAFA HLCKRCSDLE YLDLVGSSYL TSVGVANGTS SLKNLKEIKK PDFAATVFY

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.