CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39233	Canola	cytosol	92.88	93.88
CDX72259	Canola	cytosol	47.33	63.64
CDY39226	Canola	cytosol	61.21	61.65
CDY39231	Canola	cytosol	46.98	61.11
CDX72257	Canola	cytosol	60.5	60.93
CDX68681	Canola	cytosol	56.58	54.64
CDY28199	Canola	cytosol	53.74	52.25
CDY23249	Canola	cytosol	50.18	51.27
CDX68676	Canola	mitochondrion	24.2	50.37
CDY55615	Canola	cytosol	42.35	49.17
CDY57461	Canola	cytosol	49.47	46.33
CDY51272	Canola	cytosol	49.11	46.0
CDX68675	Canola	cytosol	27.4	45.83
VIT_11s0037g00430.t01	Wine grape	cytosol	48.75	44.48
PGSC0003DMT400028954	Potato	cytosol	46.98	42.86
Solyc07g005750.2.1	Tomato	cytosol	47.33	42.63
KRH72322	Soybean	cytosol	45.91	42.16
CDY49309	Canola	cytosol	34.52	37.89
GSMUA_Achr4P20480_001	Banana	cytosol	41.28	36.94
Zm00001d050166_P001	Maize	cytosol, extracellular	38.79	34.49
EES14834	Sorghum	cytosol	38.79	34.49
TraesCS1B01G073600.1	Wheat	cytosol	37.72	33.97
TraesCS1D01G057200.3	Wheat	cytosol	37.72	33.87
Os08t0269800-01	Rice	cytosol	17.79	32.26
TraesCS1A01G056500.2	Wheat	cytosol	36.65	29.34
HORVU1Hr1G011370.2	Barley	cytosol	37.37	28.53
CDY13002	Canola	nucleus	23.84	26.48
CDY39232	Canola	cytosol	2.14	25.0
CDY51578	Canola	cytosol	20.64	20.14
CDX90703	Canola	cytosol	22.78	20.13
CDY05035	Canola	cytosol	22.78	20.13
CDX75124	Canola	cytosol	20.28	20.0

Protein Annotations

EnsemblPlants:CDX72258	EnsemblPlantsGene:GSBRNA2T00099728001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	PFAM:PF13516	ProteinID:CDX72258	ProteinID:CDX72258.1
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE5D3D	MapMan:19.2.2.8.1.4.1	:

Description

BnaC07g42800D

Coordinates

chrLK031796:+:324600..325684

Molecular Weight (calculated)

32031.7 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.104

Length

281 amino acids

Sequence
(BLAST)

001: MRWELGPDWT ELTQECLLDI FSRLSLEERW TGPMFVCKTW MNGCQDPSLN LVFDLETKFQ SLPGSLSCWW SPEFGDKIDS VLRSVVDWSQ GGLKEVRVSH
101: CTDSSISYVA ERYFWCPNLE VLSVKYCPKV TDDSMLKIAL MCPNLKELDI SFSYKISCVC VDMVGKSCKS IQTFKRNLMD PAEVTKYVPS NYMEDPSIFL
201: IYGNIDAYVI GKHMHQLKHL ELRFSTLSNN GLAQLCEGCS NLEYLDLCGC NKLTSDGVTN SISNLKHLKE IKKPSFPAFI I

Best Arabidopsis Sequence Match ( AT4G30640.1 )
(BLAST)

001: MEVNGGEGKV EMGSGLYPDW SELTRECLLD IFSRLSQEQR WIGPMLVSKN WMNACYDPTL NTIFDLETRF LSFPESINWW TPEFEDKVDS FLRSVVDRSE
101: GGLTEIRIRH CTERSLSYAA ERCPNLEVLW IKNCPNVTDA SMEKIAMNCP NLRELDISYS YGITHESLIT LGRSCQNLKI LKRNLLPRLG PSLPTIVAPL
201: DYLATFPRYG NIEARIIGKY MTQLKHLEIR YSTLTARGLD SVCKGCSNLE YMDLRGCISL TRSDINTNTS GLKNLTEIIK PDFNPPIAVL RVPRPGNPRE
301: E

Arabidopsis Description

FBL19Putative F-box/LRR-repeat protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M096]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.