CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050166_P001	Maize	cytosol, extracellular	90.51	90.51
TraesCS1B01G073600.1	Wheat	cytosol	75.95	76.92
TraesCS1D01G057200.3	Wheat	cytosol	75.95	76.68
TraesCS1A01G056500.2	Wheat	cytosol	75.0	67.52
GSMUA_Achr4P20480_001	Banana	cytosol	66.14	66.56
Os08t0269800-01	Rice	cytosol	32.28	65.81
HORVU1Hr1G011370.2	Barley	cytosol	75.63	64.95
VIT_11s0037g00430.t01	Wine grape	cytosol	53.48	54.87
KRH72322	Soybean	cytosol	50.63	52.29
PGSC0003DMT400028954	Potato	cytosol	44.94	46.1
AT5G57900.1	Thale cress	cytosol	43.04	45.33
CDY51272	Canola	cytosol	42.72	45.0
Bra002686.1-P	Field mustard	cytosol	42.41	44.67
Solyc07g005750.2.1	Tomato	cytosol	43.99	44.55
CDY57461	Canola	cytosol	42.09	44.33
CDY23249	Canola	cytosol	35.76	41.09
CDX68681	Canola	cytosol	37.34	40.55
Bra010279.1-P	Field mustard	cytosol	38.61	40.53
AT4G30640.1	Thale cress	cytosol	38.29	40.2
CDY39231	Canola	cytosol	26.9	39.35
CDY39233	Canola	cytosol	34.18	38.85
Bra024054.1-P	Field mustard	cytosol	34.18	38.85
CDX72258	Canola	cytosol	34.49	38.79
CDY28199	Canola	cytosol	35.13	38.41
Bra024057.1-P	Field mustard	cytosol	33.54	37.99
CDY39226	Canola	cytosol	33.54	37.99
Bra011207.1-P	Field mustard	cytosol	37.03	37.74
CDX72257	Canola	cytosol	32.28	36.56
CDX72259	Canola	cytosol	24.05	36.36
Bra024055.1-P	Field mustard	cytosol	34.81	36.18
CDY55615	Canola	cytosol	27.53	35.95
Bra038818.1-P	Field mustard	cytosol	18.04	34.97
CDX68676	Canola	mitochondrion	14.56	34.07
CDY49309	Canola	cytosol	24.05	29.69
Bra011205.1-P	Field mustard	cytosol	22.47	25.82
CDX68675	Canola	cytosol	13.61	25.6
CDY13002	Canola	nucleus	15.51	19.37
KXG26411	Sorghum	mitochondrion	25.32	19.23
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	19.94	17.26

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EntrezGene:8067972	UniProt:C5YJY9	EnsemblPlants:EES14834
ProteinID:EES14834	ProteinID:EES14834.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078	SMART:SM00367	EnsemblPlantsGene:SORBI_3007G097900
SUPFAM:SSF52047	SUPFAM:SSF81383	unigene:Sbi.6947	UniParc:UPI0001A87899	RefSeq:XP_002445339.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:19359508..19366828

Molecular Weight (calculated)

35167.0 Da

IEP (calculated)

4.996

GRAVY (calculated)

-0.147

Length

316 amino acids

Sequence
(BLAST)

001: MATGDEAETA APASEEARDW SDMTPVCLAE AFSRLALEDL WRGAMACCRS WRDAARSRPG LFAVLNLEPG FAESTPGAEA AAWWTPAFQR RADAMLRSAA
101: TLAAGELCEI RVRHCSDDAL EFAAERSLKL SILSIKTSPA ITDRSMLTVG ACCPMLTELD ISNCYDVSYK SLEVIGQSCQ NLRVLKRNIF NWIDPSEHVG
201: IVPEDYLREC PEDGDREAIT ISKFMPKLKH LELRFSKLTA VGLNSIPEGC KDLEVLDLFG CANLTSRGID QAAANLKNLV TLVKPNFYIP RSSFHMGRYG
301: HWQLYDERFQ TNVFQI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.