Factsheet for Bra002686.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57900.1	Bra003735.1-P	AT1G75950.1	12795696
AT5G57900.1	Bra008231.1-P	AT1G75950.1	12795696
AT5G57900.1	Bra015801.1-P	AT1G75950.1	12795696
AT5G57900.1	Bra003735.1-P	AT1G75950.1	21798944
AT5G57900.1	Bra008231.1-P	AT1G75950.1	21798944
AT5G57900.1	Bra015801.1-P	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51272	Canola	cytosol	99.67	99.67
AT5G57900.1	Thale cress	cytosol	81.0	81.0
VIT_11s0037g00430.t01	Wine grape	cytosol	60.33	58.77
KRH72322	Soybean	cytosol	55.0	53.92
Bra024054.1-P	Field mustard	cytosol	45.67	49.28
Bra010279.1-P	Field mustard	cytosol	49.33	49.17
GSMUA_Achr4P20480_001	Banana	cytosol	51.0	48.73
PGSC0003DMT400028954	Potato	cytosol	50.0	48.7
Solyc07g005750.2.1	Tomato	cytosol	50.33	48.4
Bra038818.1-P	Field mustard	cytosol	25.67	47.24
Bra011207.1-P	Field mustard	cytosol	48.67	47.1
Bra024057.1-P	Field mustard	cytosol	42.67	45.88
TraesCS1B01G073600.1	Wheat	cytosol	46.67	44.87
TraesCS1D01G057200.3	Wheat	cytosol	46.33	44.41
Bra024055.1-P	Field mustard	cytosol	43.67	43.09
Zm00001d050166_P001	Maize	cytosol, extracellular	45.33	43.04
EES14834	Sorghum	cytosol	44.67	42.41
TraesCS1A01G056500.2	Wheat	cytosol	46.67	39.89
HORVU1Hr1G011370.2	Barley	cytosol	47.67	38.86
Bra011205.1-P	Field mustard	cytosol	32.33	35.27
Os08t0269800-01	Rice	cytosol	16.67	32.26
Bra038402.1-P	Field mustard	cytosol	24.67	23.34
Bra000662.1-P	Field mustard	cytosol	24.67	23.27

Protein Annotations

MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra002686	EnsemblPlants:Bra002686.1	EnsemblPlants:Bra002686.1-P	InterPro:F-box-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0019005	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
UniProt:M4CEQ5	PFAM:PF13516	PANTHER:PTHR44841	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI000254516E	:	:	:	:	:

Description

AT5G57900 (E=8e-150) SKIP1 | SKIP1 (SKP1 INTERACTING PARTNER 1); protein binding

Coordinates

chrA10:-:8238879..8241464

Molecular Weight (calculated)

34494.2 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.330

Length

300 amino acids

Sequence
(BLAST)

001: MDDWGGLAPE ILTNIISRLT IQERWTGPMF VRKSWLAVCR DPYLWSSFDL EPWFESYPES TQWWSPDFER KIDSMLRSVV DWSDGGLTEI RVRHCSDHAL
101: SYAAERCPIL EALAVRSSPH VTDASMAKVA FRCRSLKELD ISYCHEISHD ALVMIGRNCP NLTTLKRNLM DWSDSSRHIG SVVPTEYIGA CPQDGDREAE
201: AIGKHMMNLE RLEIQFSRLS AKGLAWVCEG CMKLEYLDLF GCVHLSSRDI ANNVSRLKGI KEVKKPDVYV PRSGPVVAQT ERYGHWRLYD ERFDIQSMRI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.