Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51272 | Canola | cytosol | 81.33 | 81.33 |
| CDY57461 | Canola | cytosol | 81.33 | 81.33 |
| Bra002686.1-P | Field mustard | cytosol | 81.0 | 81.0 |
| VIT_11s0037g00430.t01 | Wine grape | cytosol | 61.67 | 60.06 |
| KRH72322 | Soybean | cytosol | 58.33 | 57.19 |
| GSMUA_Achr4P20480_001 | Banana | cytosol | 54.0 | 51.59 |
| PGSC0003DMT400028954 | Potato | cytosol | 52.0 | 50.65 |
| Solyc07g005750.2.1 | Tomato | cytosol | 51.67 | 49.68 |
| AT4G30640.1 | Thale cress | cytosol | 49.0 | 48.84 |
| TraesCS1B01G073600.1 | Wheat | cytosol | 47.33 | 45.51 |
| TraesCS1D01G057200.3 | Wheat | cytosol | 47.33 | 45.37 |
| EES14834 | Sorghum | cytosol | 45.33 | 43.04 |
| Zm00001d050166_P001 | Maize | cytosol, extracellular | 45.33 | 43.04 |
| TraesCS1A01G056500.2 | Wheat | cytosol | 47.67 | 40.74 |
| HORVU1Hr1G011370.2 | Barley | cytosol | 48.33 | 39.4 |
| Os08t0269800-01 | Rice | cytosol | 15.67 | 30.32 |
| AT4G08980.2 | Thale cress | cytosol | 25.67 | 24.29 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.1 | Gene3D:3.80.10.10 | EntrezGene:835901 | ProteinID:AED96969.1 | EMBL:AF263377 |
| EMBL:AK229464 | ArrayExpress:AT5G57900 | EnsemblPlantsGene:AT5G57900 | RefSeq:AT5G57900 | TAIR:AT5G57900 | RefSeq:AT5G57900-TAIR-G |
| EnsemblPlants:AT5G57900.1 | TAIR:AT5G57900.1 | Unigene:At.7657 | ProteinID:BAB08860.1 | EMBL:BT026067 | InterPro:F-box-like_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0019005 | GO:GO:0019538 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_568870.1 | PFAM:PF13516 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR44001 | PANTHER:PTHR44001:SF2 | UniProt:Q9FDX1 | Symbol:SKIP1 | SMART:SM00367 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000AAEFF | : | : | : |
Description
SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
Coordinates
chr5:-:23449694..23450933
Molecular Weight (calculated)
34567.3 Da
IEP (calculated)
5.800
GRAVY (calculated)
-0.300
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.