Factsheet for TraesCS1D01G057200.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G073600.1	Wheat	cytosol	93.93	94.23
TraesCS1A01G056500.2	Wheat	cytosol	93.29	83.19
HORVU1Hr1G011370.2	Barley	cytosol	90.1	76.63
EES14834	Sorghum	cytosol	76.68	75.95
Zm00001d050166_P001	Maize	cytosol, extracellular	73.48	72.78
GSMUA_Achr4P20480_001	Banana	cytosol	67.41	67.2
Os08t0269800-01	Rice	cytosol	33.23	67.1
VIT_11s0037g00430.t01	Wine grape	cytosol	54.31	55.19
KRH72322	Soybean	cytosol	52.4	53.59
AT5G57900.1	Thale cress	cytosol	45.37	47.33
CDY51272	Canola	cytosol	44.73	46.67
Bra002686.1-P	Field mustard	cytosol	44.41	46.33
PGSC0003DMT400028954	Potato	cytosol	45.37	46.1
CDY57461	Canola	cytosol	44.09	46.0
Solyc07g005750.2.1	Tomato	cytosol	44.73	44.87
CDX68681	Canola	cytosol	37.7	40.55
CDY23249	Canola	cytosol	34.19	38.91
Bra010279.1-P	Field mustard	cytosol	37.06	38.54
CDY28199	Canola	cytosol	35.14	38.06
Bra024054.1-P	Field mustard	cytosol	33.55	37.77
CDY39233	Canola	cytosol	33.55	37.77
CDX72258	Canola	cytosol	33.87	37.72
AT4G30640.1	Thale cress	cytosol	36.1	37.54
Bra011207.1-P	Field mustard	cytosol	37.06	37.42
CDY55615	Canola	cytosol	28.75	37.19
CDY39231	Canola	cytosol	25.24	36.57
Bra024057.1-P	Field mustard	cytosol	32.59	36.56
CDY39226	Canola	cytosol	32.59	36.56
CDX72257	Canola	cytosol	32.27	36.2
Bra024055.1-P	Field mustard	cytosol	34.19	35.2
CDX72259	Canola	cytosol	23.0	34.45
Bra038818.1-P	Field mustard	cytosol	17.57	33.74
CDX68676	Canola	mitochondrion	13.42	31.11
CDY49309	Canola	cytosol	23.32	28.52
CDX68675	Canola	cytosol	14.7	27.38
Bra011205.1-P	Field mustard	cytosol	23.96	27.27
TraesCS7D01G179800.1	Wheat	cytosol	20.45	19.81
TraesCS2D01G314700.1	Wheat	cytosol, nucleus, plastid	26.2	19.81
CDY13002	Canola	nucleus	14.38	17.79
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	19.81	15.86

Protein Annotations

EnsemblPlants:TraesCS1D01G057200.3	EnsemblPlantsGene:TraesCS1D01G057200	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078
SEG:seg	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.1	:

Description

No Description!

Coordinates

chr1D:-:37531206..37533454

Molecular Weight (calculated)

34777.6 Da

IEP (calculated)

5.113

GRAVY (calculated)

-0.093

Length

313 amino acids

Sequence
(BLAST)

001: MATGREAGEP AMAEEERDWA DLTPVCLAEA FSRLGPEDLW RGAMACCRAW REAARSRPAL FAALDLEPAF DAVGADAAEW WTPAFQRRVD AMLRSAASLA
101: AGELREVRVR HCSDDALAFA AKSSPQLSIL SIQSSPSVTD RSMLTVASCC PILTELDISY CYEVSYKSLE VIGQSCPNLV VLKRSIFNWL DSSEHVRTVP
201: AEYLRACPQD GDREAIAISR SMPKLKQLVL RFAKLSGVGL NSIAEGCKEL EVLDLFGCAN LTSRGIEQAA ANLKNLEMLV KPNFYIPRSA FHMERYGHWQ
301: LYDERFQTNV FQI

Best Arabidopsis Sequence Match ( AT5G57900.1 )
(BLAST)

001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI

Arabidopsis Description

SKIP1F-box protein SKIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FDX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.