Factsheet for TraesCS6D01G296000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G347000.1	Wheat	cytosol	80.82	96.64
TraesCS6A01G316400.1	Wheat	cytosol	75.96	89.73
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	73.91	80.28
HORVU6Hr1G077730.1	Barley	mitochondrion	51.66	79.53
Os02t0757700-01	Rice	cytosol	62.92	75.93
Zm00001d052200_P001	Maize	cytosol	63.43	74.03
Zm00001d018111_P002	Maize	cytosol	61.64	69.05
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	64.19	68.77
TraesCS7D01G179800.1	Wheat	cytosol	55.24	66.87
GSMUA_Achr6P30460_001	Banana	cytosol	48.59	58.82
GSMUA_AchrUn_...	Banana	cytosol	48.08	58.57
GSMUA_Achr9P14880_001	Banana	cytosol	47.57	57.94
GSMUA_Achr3P06570_001	Banana	cytosol	47.06	57.32
VIT_00s0391g00040.t01	Wine grape	cytosol	41.18	50.79
PGSC0003DMT400041822	Potato	cytosol	41.69	50.78
Solyc11g009050.1.1	Tomato	cytosol	42.2	50.0
VIT_18s0001g06220.t01	Wine grape	cytosol	37.34	50.0
Bra000662.1-P	Field mustard	cytosol	38.62	47.48
AT4G08980.2	Thale cress	cytosol	38.36	47.32
CDY05035	Canola	cytosol	38.36	47.17
CDX90703	Canola	cytosol	38.36	47.17
Bra038402.1-P	Field mustard	cytosol	38.11	47.0
KRH62319	Soybean	cytosol	37.34	45.48
CDX75124	Canola	cytosol	32.99	45.26
KRH53038	Soybean	cytosol	37.08	45.17
CDY51578	Canola	cytosol	33.25	45.14
PGSC0003DMT400043293	Potato	cytosol	24.04	44.34
TraesCS1D01G057200.3	Wheat	cytosol	15.86	19.81
TraesCS2D01G314700.1	Wheat	cytosol, nucleus, plastid	20.46	19.32

Protein Annotations

EnsemblPlants:TraesCS6D01G296000.1	EnsemblPlantsGene:TraesCS6D01G296000	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44841	PANTHER:PTHR44841:SF2	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52047	MapMan:19.2.2.8.1.4.6

Description

No Description!

Coordinates

chr6D:-:407207815..407209272

Molecular Weight (calculated)

43542.9 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.184

Length

391 amino acids

Sequence
(BLAST)

001: MGAPRVRRLL LEMLLVLPLV SSFGFRSPWP SALLRLRGES AAPSCSPDPR VISKGRRGGR ERGGAMGESE YRCWEELLPD ALGLVFRNLP LQEVLTVVPR
101: VCKSWGRVVA GPYCWQEIDI EEWSQQRHSR PDHLIRMLDL LLRRSSGACR RISVSGLPCD PLFSFIGDHA RALRTLEIPR SEISDAVVEA VAPGLPNLTF
201: LDISSCTKIG ARALEAFGRH CRSLAALRRV MHPIDVAGRN ACGQHDEARA IARTMPALRH LEVGYMLVTT EAILEVLSRC RGLEFVDLRG CWAVDEALLR
301: ARHPRLSVLG PGVDDCFENS YWEECSDDDS EDDEVYSWEL MDDDEYYGVV GSDDDEAVWG DGPGLVENLE VRFYGGGFSE SYAGIDWPAS P

Best Arabidopsis Sequence Match ( AT4G08980.1 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.