Factsheet for GSMUA_Achr9P14880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06570_001	Banana	cytosol	85.05	85.05
GSMUA_AchrUn_...	Banana	cytosol	75.39	75.39
GSMUA_Achr6P30460_001	Banana	cytosol	75.7	75.23
Os02t0757700-01	Rice	cytosol	64.49	63.89
TraesCS7B01G083700.1	Wheat	cytosol	62.62	62.23
Os06t0219700-01	Rice	cytosol	61.37	62.15
TraesCS7D01G179800.1	Wheat	cytosol	61.99	61.61
TraesCS7A01G178000.1	Wheat	cytosol	62.31	61.54
Zm00001d052200_P001	Maize	cytosol	62.62	60.0
VIT_00s0391g00040.t01	Wine grape	cytosol	58.88	59.62
TraesCS6B01G347000.1	Wheat	cytosol	58.88	57.8
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	64.8	56.99
TraesCS3B01G550600.1	Wheat	cytosol	55.76	56.65
KRH53038	Soybean	cytosol	56.07	56.07
KRH62319	Soybean	cytosol	56.07	56.07
HORVU7Hr1G036660.5	Barley	cytosol	57.63	55.72
VIT_18s0001g06220.t01	Wine grape	cytosol	50.47	55.48
TraesCS6A01G316400.1	Wheat	cytosol	57.01	55.29
PGSC0003DMT400041822	Potato	cytosol	54.83	54.83
TraesCS3A01G490000.1	Wheat	cytosol, golgi, nucleus	56.39	53.87
Zm00001d018111_P002	Maize	cytosol	58.26	53.58
Solyc11g009050.1.1	Tomato	cytosol	54.52	53.03
AT4G08980.2	Thale cress	cytosol	50.78	51.42
CDX90703	Canola	cytosol	50.47	50.94
CDY05035	Canola	cytosol	50.47	50.94
Bra000662.1-P	Field mustard	cytosol	50.16	50.63
HORVU6Hr1G077730.1	Barley	mitochondrion	39.88	50.39
Bra038402.1-P	Field mustard	cytosol	49.53	50.16
CDY51578	Canola	cytosol	43.93	48.96
CDX75124	Canola	cytosol	43.3	48.77
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	57.94	47.57
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	52.96	47.22
PGSC0003DMT400043293	Potato	cytosol	31.15	47.17
HORVU3Hr1G108730.1	Barley	cytosol, golgi, mitochondrion	57.01	47.16
HORVU7Hr1G122060.1	Barley	cytosol	23.99	43.02
HORVU7Hr1G121910.1	Barley	cytosol	10.28	37.5
HORVU7Hr1G122300.1	Barley	mitochondrion	10.28	33.33
GSMUA_Achr4P20480_001	Banana	cytosol	21.18	21.66

Protein Annotations

EnsemblPlants:GSMUA_Achr9P14880_001	EnsemblPlants:GSMUA_Achr9T14880_001	EnsemblPlantsGene:GSMUA_Achr9G14880_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44841
PANTHER:PTHR44841:SF2	PFAM:PF12937	SUPFAM:SSF52047	UniParc:UPI000294A6F8	UniProt:M0U0E6	MapMan:19.2.2.8.1.4.6

Description

F-box protein FBW2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G14880_001]

Coordinates

chr9:-:9743368..9746823

Molecular Weight (calculated)

36937.9 Da

IEP (calculated)

4.429

GRAVY (calculated)

-0.220

Length

321 amino acids

Sequence
(BLAST)

001: MADCSDFRAW EELIPDALGL IFSNLSLQEI LTMVPRVCKS WCRVVLGPYC WQEIDIEEWS LRCKPEQLDQ MLQMLVTRSC GSFRRLSISG LHTESMFTFI
101: ADHADSLQRL ELPRSEISDS IVERVAPRLS NITFLDVSYC GKIGAHALEA FGRNCKFLVG LRRRMHPIEV KDKVCQDEEA YAIANTMPKL RRLEMAYLVL
201: TTTGVLDILS RCRDLEFLDL RGCWDVKLDE KYIKECHPRL KVLGPHVTDS YERSFWEDCS DYSDSTIYSW DFIDDGINIY DGESDDDGIW NDEQGLEVLE
301: VRFYGCGFSD ASAGFEWPPS P

Best Arabidopsis Sequence Match ( AT4G08980.3 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.