Factsheet for PGSC0003DMT400041822

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g009050.1.1	Tomato	cytosol	98.75	96.06
PGSC0003DMT400043293	Potato	cytosol	54.21	82.08
VIT_00s0391g00040.t01	Wine grape	cytosol	69.47	70.35
GSMUA_Achr6P30460_001	Banana	cytosol	57.01	56.66
GSMUA_Achr3P06570_001	Banana	cytosol	55.76	55.76
GSMUA_Achr9P14880_001	Banana	cytosol	54.83	54.83
GSMUA_AchrUn_...	Banana	cytosol	52.96	52.96
Os06t0219700-01	Rice	cytosol	51.4	52.05
TraesCS7D01G179800.1	Wheat	cytosol	52.34	52.01
TraesCS7B01G083700.1	Wheat	cytosol	52.02	51.7
TraesCS7A01G178000.1	Wheat	cytosol	52.34	51.69
Zm00001d052200_P001	Maize	cytosol	53.27	51.04
TraesCS6B01G347000.1	Wheat	cytosol	50.78	49.85
Os02t0757700-01	Rice	cytosol	50.16	49.69
TraesCS6A01G316400.1	Wheat	cytosol	50.78	49.24
Zm00001d018111_P002	Maize	cytosol	52.65	48.42
HORVU7Hr1G036660.5	Barley	cytosol	49.84	48.19
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	53.27	46.85
TraesCS3B01G550600.1	Wheat	cytosol	43.61	44.3
TraesCS3A01G490000.1	Wheat	cytosol, golgi, nucleus	44.24	42.26
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	50.78	41.69
HORVU6Hr1G077730.1	Barley	mitochondrion	32.09	40.55
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	44.86	40.0
HORVU3Hr1G108730.1	Barley	cytosol, golgi, mitochondrion	46.73	38.66
HORVU7Hr1G122060.1	Barley	cytosol	20.25	36.31
HORVU7Hr1G121910.1	Barley	cytosol	9.66	35.23
PGSC0003DMT400017590	Potato	cytosol	28.66	29.49
HORVU7Hr1G122300.1	Barley	mitochondrion	7.79	25.25
PGSC0003DMT400028954	Potato	cytosol	22.74	23.7

Protein Annotations

EnsemblPlants:PGSC0003DMT400041822	EnsemblPlantsGene:PGSC0003DMG400016227	EntrezGene:102593696	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR44841	PANTHER:PTHR44841:SF2	PGSC:PGSC0003DMG400016227	RefSeq:XP_006353224.1	SEG:seg
SUPFAM:SSF52047	UniParc:UPI0002954D71	UniProt:M1BC27	MapMan:19.2.2.8.1.4.6	:	:

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400016227]

Coordinates

chr11:-:2814332..2817907

Molecular Weight (calculated)

36590.4 Da

IEP (calculated)

4.253

GRAVY (calculated)

-0.267

Length

321 amino acids

Sequence
(BLAST)

001: MEEGFEFRPW DELLPDALGL IFRNLSLQEV LTVVPRVCKS WGKAVKGPYC WQEIDIEEWS KNRCPENLDR MLRLLIPRSC GSLRKLCVSG LSDKSSFEFI
101: ANNAKSLQTL RLPKCELSDS VVEQVAGTFS NITFLDVSYC IKIGARALEA IGKHCKCLTG LRRTMHPLEV IDKLSQDDEA LAIATSMPKL KQLEIAYMLV
201: GTLSISEVLQ NCRQLELLDV RGCWNVNLDE NFVKKFNKLK VVGPLVVDYY DKNGWDNCSD YSGSSGYIPW DFVAGDIDDD FDDDEMSDGY WEDEEHVEDV
301: EMWFYDDLNA VDAGYDWPQS P

Best Arabidopsis Sequence Match ( AT4G08980.3 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.