Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g088240.2.1 | Tomato | cytosol | 77.88 | 79.15 |
| VIT_07s0031g03110.t01 | Wine grape | cytosol | 44.87 | 49.65 |
| CDY39232 | Canola | cytosol | 3.21 | 41.67 |
| PGSC0003DMT400041822 | Potato | cytosol | 29.49 | 28.66 |
| PGSC0003DMT400043293 | Potato | cytosol | 18.59 | 27.36 |
| Os04t0448700-00 | Rice | mitochondrion | 35.58 | 26.88 |
| KXG26411 | Sorghum | mitochondrion | 35.26 | 26.44 |
| TraesCS2B01G334900.1 | Wheat | cytosol, nucleus, plastid | 34.29 | 25.91 |
| TraesCS2A01G316800.1 | Wheat | nucleus | 33.97 | 25.85 |
| TraesCS2D01G314700.1 | Wheat | cytosol, nucleus, plastid | 34.29 | 25.85 |
| PGSC0003DMT400028954 | Potato | cytosol | 22.44 | 22.73 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102593658 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | UniProt:M1A955 | PFAM:PF12937 | PFAM:PF13516 | EnsemblPlantsGene:PGSC0003DMG400006825 |
| PGSC:PGSC0003DMG400006825 | EnsemblPlants:PGSC0003DMT400017590 | PANTHER:PTHR44841 | PANTHER:PTHR44841:SF1 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI000294F71C | RefSeq:XP_006345378.1 | SEG:seg | : | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006825]
Coordinates
chr1:-:64517313..64522765
Molecular Weight (calculated)
35680.6 Da
IEP (calculated)
4.973
GRAVY (calculated)
-0.317
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MENEREEMES TNGKSKRVCV RVENDAVCAT GGRWDELSPE LLASIFVRIV PPELMVKSVA LVCRNWMEIV SGPYCWTEID LEHWCRKCCI ANRSHLIDPV
101: VRKIVRRSRS TFRRLSTYRL GDVGFSFAAS RGRCLKTLQI PMCEVTDQVV EKHVRFLANL TFLDISYCLK ITEKGLKAFG TQCKSLTHFR RNMPLWELPT
201: SVEASDVNDQ EALIIAETMK GLQRLDFAFN RLSDTGIEAI LTQCKALTHL EIQGCWNVEL KGDLEVRCKK LVDFRSPWID EHEDNLVDSS DNEDESDDES
301: IYSESPSSSD LD
101: VRKIVRRSRS TFRRLSTYRL GDVGFSFAAS RGRCLKTLQI PMCEVTDQVV EKHVRFLANL TFLDISYCLK ITEKGLKAFG TQCKSLTHFR RNMPLWELPT
201: SVEASDVNDQ EALIIAETMK GLQRLDFAFN RLSDTGIEAI LTQCKALTHL EIQGCWNVEL KGDLEVRCKK LVDFRSPWID EHEDNLVDSS DNEDESDDES
301: IYSESPSSSD LD
001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP
Arabidopsis Description
FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.