Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G316800.1 | Wheat | nucleus | 93.46 | 94.15 |
| TraesCS2D01G314700.1 | Wheat | cytosol, nucleus, plastid | 92.25 | 92.03 |
| Os04t0448700-00 | Rice | mitochondrion | 59.08 | 59.08 |
| KXG26411 | Sorghum | mitochondrion | 56.42 | 56.01 |
| VIT_07s0031g03110.t01 | Wine grape | cytosol | 30.75 | 45.04 |
| Solyc01g088240.2.1 | Tomato | cytosol | 26.63 | 35.83 |
| PGSC0003DMT400017590 | Potato | cytosol | 25.91 | 34.29 |
| TraesCS1B01G073600.1 | Wheat | cytosol | 18.89 | 25.0 |
| TraesCS6B01G347000.1 | Wheat | cytosol | 19.37 | 24.46 |
| TraesCS7B01G083700.1 | Wheat | cytosol | 17.68 | 22.6 |
| TraesCS3B01G550600.1 | Wheat | cytosol | 16.95 | 22.15 |
| CDY39232 | Canola | cytosol | 0.97 | 16.67 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G334900.1 | EnsemblPlantsGene:TraesCS2B01G334900 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44841 |
| PANTHER:PTHR44841:SF1 | SEG:seg | SUPFAM:SSF52047 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
No Description!
Coordinates
chr2B:-:478191486..478193794
Molecular Weight (calculated)
44728.9 Da
IEP (calculated)
4.760
GRAVY (calculated)
-0.402
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRRNPPSGA GFPAGEGSGW EAKRERPNGG WRGRLPAPVV KWSHAEAMKK KPKVGGGAAL VGDGGGWRME MEAEMVGLDG RSCGGRGFFG TSWAEAAEKS
101: ADAATGGGEN EWCLPETEKA SPCVAVEGGG GGDVRGDEVK EEMYDWRWTE AASPEIMALI LRGRFAADEI ARGPAAVCRA WREAAASPDM WGDVDIEAWC
201: RRVKCRVRAD AAVRRLVARS QGTIRRLSAY HVGDAALAYV AASGKLLNVL QIPMSEISDQ AVEKYVKCFP ALRVLDISYC LKVTSRGMEA IGRQCKSLAQ
301: LKRNMPPESP QGNDAAPKVV EDEALAVANT MPMLKQLELA YGLFSDVGLD AILTKCPLLR TLDILGSLNV RLDGDIEERC CALESFREPW EPDYDENSSS
401: GGDYDYDDTE SDD
101: ADAATGGGEN EWCLPETEKA SPCVAVEGGG GGDVRGDEVK EEMYDWRWTE AASPEIMALI LRGRFAADEI ARGPAAVCRA WREAAASPDM WGDVDIEAWC
201: RRVKCRVRAD AAVRRLVARS QGTIRRLSAY HVGDAALAYV AASGKLLNVL QIPMSEISDQ AVEKYVKCFP ALRVLDISYC LKVTSRGMEA IGRQCKSLAQ
301: LKRNMPPESP QGNDAAPKVV EDEALAVANT MPMLKQLELA YGLFSDVGLD AILTKCPLLR TLDILGSLNV RLDGDIEERC CALESFREPW EPDYDENSSS
401: GGDYDYDDTE SDD
001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP
Arabidopsis Description
FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.