Factsheet for Bra000662.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90703	Canola	cytosol	99.69	99.69
CDY05035	Canola	cytosol	98.43	98.43
Bra038402.1-P	Field mustard	cytosol	91.51	91.8
AT4G08980.2	Thale cress	cytosol	89.94	90.22
KRH62319	Soybean	cytosol	58.18	57.63
KRH53038	Soybean	cytosol	57.55	57.01
VIT_18s0001g06220.t01	Wine grape	cytosol	49.37	53.77
GSMUA_Achr6P30460_001	Banana	cytosol	53.14	52.32
GSMUA_Achr3P06570_001	Banana	cytosol	50.94	50.47
GSMUA_Achr9P14880_001	Banana	cytosol	50.63	50.16
GSMUA_AchrUn_...	Banana	cytosol	50.63	50.16
TraesCS7D01G179800.1	Wheat	cytosol	48.74	47.99
TraesCS7B01G083700.1	Wheat	cytosol	48.43	47.68
Os06t0219700-01	Rice	cytosol	47.48	47.63
TraesCS7A01G178000.1	Wheat	cytosol	48.43	47.38
Os02t0757700-01	Rice	cytosol	47.17	46.3
TraesCS6B01G347000.1	Wheat	cytosol	47.48	46.18
Zm00001d052200_P001	Maize	cytosol	48.43	45.97
TraesCS6A01G316400.1	Wheat	cytosol	47.48	45.62
HORVU7Hr1G036660.5	Barley	cytosol	46.23	44.28
TraesCS3B01G550600.1	Wheat	cytosol	43.4	43.67
EES07216	Sorghum	cytosol, golgi, mitochondrion, plastid	49.06	42.74
Zm00001d018111_P002	Maize	cytosol	46.86	42.69
TraesCS3A01G490000.1	Wheat	cytosol, golgi, nucleus	44.34	41.96
TraesCS6D01G296000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	47.48	38.62
HORVU6Hr1G077730.1	Barley	mitochondrion	30.19	37.8
HORVU6Hr1G077670.2	Barley	cytosol, mitochondrion	42.77	37.78
HORVU3Hr1G108730.1	Barley	cytosol, golgi, mitochondrion	42.45	34.79
HORVU7Hr1G122060.1	Barley	cytosol	19.18	34.08
HORVU7Hr1G122300.1	Barley	mitochondrion	9.12	29.29
HORVU7Hr1G121910.1	Barley	cytosol	7.23	26.14
Bra002686.1-P	Field mustard	cytosol	23.27	24.67
Bra024054.1-P	Field mustard	cytosol	20.13	23.02
Bra011207.1-P	Field mustard	cytosol	21.07	21.61
Bra038818.1-P	Field mustard	cytosol	11.01	21.47
Bra010279.1-P	Field mustard	cytosol	19.81	20.93
Bra024055.1-P	Field mustard	cytosol	19.81	20.72
Bra024057.1-P	Field mustard	cytosol	17.61	20.07
Bra011205.1-P	Field mustard	cytosol	15.09	17.45

Protein Annotations

EnsemblPlants:Bra000662.1	EnsemblPlants:Bra000662.1-P	EnsemblPlantsGene:Bra000662	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44841	PANTHER:PTHR44841:SF2	PFAM:PF12937	PFAM:PF13516
SUPFAM:SSF52047	UniParc:UPI000254027A	UniProt:M4C8Y4	MapMan:19.2.2.8.1.4.6	:	:

Description

AT4G08980 (E=1e-173) | F-box family protein (FBW2)

Coordinates

chrA03:+:12351325..12352399

Molecular Weight (calculated)

36372.0 Da

IEP (calculated)

4.418

GRAVY (calculated)

-0.251

Length

318 amino acids

Sequence
(BLAST)

001: MEEEDGEFRQ WDELLPDALG LIFSHLPLQE ILTVVPRVCK AWNRAVTGPY CWQEIDIELW SNRCHQSDHL DRMLQMLILR SSGSLRKLSV TGLQNDSIFS
101: FIAQHAGSLK TLKVPRSGLS NSGVVNVAEK LSSLTFLDLS YCCKLGPEAI QAIGRHCKSL IEFSRNMHPL DVASVDSHDD EADAIASTMP KLKRLEIAYH
201: RVSTEGVLKI LSSCVSLEFL ELRGCWDVQL DNKFFKEKFP DMKVLGPRVI GFYDMINDWE DCCSDYFSDG SDYLAWEFLE DGEMGEFYEE DFEHGWDDHF
301: YADSVNIDME PHLWPPSP

Best Arabidopsis Sequence Match ( AT4G08980.3 )
(BLAST)

001: MEEDCEFRHW DELIPDALGL IFSHLPLQEV LTVVPRVCKA WNRAVTGPYC WQEIDIELWS NRFHQSDHLD RMLEMLIPRS AGSLRKLSVT GLRNDSIFSF
101: IAQHAGSLKT LKVPRSGLTN SGVVNVAEKL SSLTFLDLSY CCKIGPEAIQ AIGKHCKSLR EFCRNMHPLD VASVVSHDDE AYAIANTMPK LKRLEIAYHR
201: VSTEGVLKIL SCCVFLEFLE LRGCWDVQLD NKFFKEKFPD MKVLGPRVIG FYDMINDWED CCSDYFSDGS DYLAWEFFED GVMGEFYEDE FEHGWDDNFY
301: AENAVLDMEP HIWPPSP

Arabidopsis Description

FBW2FBW2 [Source:UniProtKB/TrEMBL;Acc:A0A178UUC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.