Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23126 | Canola | nucleus | 98.28 | 36.19 |
| Bra027603.1-P | Field mustard | nucleus | 95.69 | 35.69 |
| CDY13058 | Canola | nucleus | 95.69 | 35.69 |
| CDY39424 | Canola | nucleus | 87.93 | 32.48 |
| CDY64948 | Canola | nucleus | 87.93 | 32.48 |
| AT5G45360.1 | Thale cress | nucleus | 77.59 | 28.48 |
| VIT_02s0087g00790.t01 | Wine grape | nucleus | 50.0 | 19.02 |
| KRH28992 | Soybean | nucleus | 52.59 | 18.94 |
| KRH76466 | Soybean | nucleus | 52.59 | 18.83 |
| PGSC0003DMT400047541 | Potato | nucleus | 50.0 | 14.95 |
| Os06t0709100-01 | Rice | nucleus | 43.97 | 13.6 |
| HORVU7Hr1G095390.2 | Barley | cytosol | 29.31 | 13.44 |
| TraesCS7B01G308300.4 | Wheat | cytosol, mitochondrion, nucleus | 43.97 | 13.32 |
| TraesCS7D01G401900.4 | Wheat | cytosol, mitochondrion, nucleus | 43.97 | 13.28 |
| TraesCS7A01G408600.1 | Wheat | cytosol, nucleus, plastid | 43.1 | 13.02 |
| PGSC0003DMT400004963 | Potato | nucleus | 46.55 | 12.98 |
| Solyc08g075380.2.1 | Tomato | nucleus | 45.69 | 12.74 |
| KXG20829 | Sorghum | nucleus | 41.38 | 12.6 |
| HORVU7Hr1G095400.5 | Barley | cytosol, mitochondrion, nucleus | 43.97 | 12.29 |
| Zm00001d014742_P001 | Maize | nucleus | 41.38 | 11.91 |
| GSMUA_Achr1P10670_001 | Banana | cytosol | 46.55 | 10.67 |
Protein Annotations
| EnsemblPlants:CDY35006 | EnsemblPlantsGene:GSBRNA2T00057604001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR22990 | PANTHER:PTHR22990:SF27 | PFAM:PF12937 |
| PFscan:PS50181 | ProteinID:CDY35006 | ProteinID:CDY35006.1 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 |
| UniParc:UPI0004EEEDD0 | UniProt:A0A078HBA7 | MapMan:35.1 | : | : | : |
Description
BnaA01g27280DBnaA01g27280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBA7]
Coordinates
chrLK032344:+:337625..338337
Molecular Weight (calculated)
13517.8 Da
IEP (calculated)
4.782
GRAVY (calculated)
-0.894
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSDDEDEC FARFLESEVS SVEDEEKTKE PEPKRQRIEK DKTKVVVDKD VDQKENGHNK DRNGAKRIES GDFTKVPTEL FRHIFKFLSS EDLLSCALVC
101: KFLNFTASDE SLWRRL
101: KFLNFTASDE SLWRRL
001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC
Arabidopsis Description
SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.