Factsheet for Solyc08g075380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004963	Potato	nucleus	98.08	98.08
VIT_02s0087g00790.t01	Wine grape	nucleus	51.92	70.82
HORVU7Hr1G095390.2	Barley	cytosol	41.59	68.38
KRH76466	Soybean	nucleus	52.88	67.9
KRH28992	Soybean	nucleus	52.16	67.39
AT5G45360.1	Thale cress	nucleus	42.55	56.01
CDY39424	Canola	nucleus	41.11	54.46
Bra025080.1-P	Field mustard	nucleus	40.87	53.97
Bra027603.1-P	Field mustard	nucleus	40.14	53.7
CDY64948	Canola	nucleus	40.38	53.5
CDY13058	Canola	nucleus	39.9	53.38
CDY23126	Canola	nucleus	40.14	53.02
Os06t0709100-01	Rice	nucleus	46.88	52.0
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	45.43	49.35
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	45.43	49.22
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	45.19	48.96
KXG20829	Sorghum	nucleus	44.71	48.82
CDY35006	Canola	nucleus	12.74	45.69
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	45.43	45.54
Zm00001d014742_P001	Maize	nucleus	42.07	43.42
GSMUA_Achr1P10670_001	Banana	cytosol	47.84	39.33

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR001810	UniProt:K4CMQ5
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27	SMART:SM00256	SUPFAM:SSF81383
EnsemblPlantsGene:Solyc08g075380.2	EnsemblPlants:Solyc08g075380.2.1	UniParc:UPI000276B6E0	SEG:seg	:	:

Description

F-box protein SKIP31 [Source:Projected from Arabidopsis thaliana (AT5G45360) UniProtKB/Swiss-Prot;Acc:Q9FHK0]

Coordinates

chr8:-:59514117..59520385

Molecular Weight (calculated)

47598.7 Da

IEP (calculated)

4.162

GRAVY (calculated)

-0.669

Length

416 amino acids

Sequence
(BLAST)

001: MAIFDDEDEP LVQFLESEIF TLSDQDEEIV EDIMDEGDVK RKGKRLKVED GNDGFEGEEE RVTKKMRVLV DEDESEYEDE IEGKEKREQD EEEEEEKREA
101: KVMKIEEEEE DEEEKVKALL SSPSLSAPAE VECASSPPRM SQSVMDNNNS VASTSDNMSQ VPSRIETGIL SKVPPELLRH ILKFLSPEDL VACTMVCKFL
201: NFAASDESLW RWLYRMRWGL LLPTRKPRDC AWKKLYIQRD ADDMMEFVRN TPTEFKEYYI QMQAAKRSQA PPPSQVNDDR IILDKTVADQ VSTWKKSKGL
301: GDKVVIDHVC SGETCTYYQI GDVYVCEKTG YVHVCDDTCK EVVSDPINGL LVCTISGHCF DRMLSPSEME LDGEQQQVGT TDEAEPFMGS GRFARAYLLG
401: YNCDDEKELE DALRFC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.