Factsheet for Bra025080.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45360.1	Bra003735.1-P	AT1G75950.1	12795696
AT5G45360.1	Bra008231.1-P	AT1G75950.1	12795696
AT5G45360.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39424	Canola	nucleus	98.41	98.73
Bra027603.1-P	Field mustard	nucleus	83.81	84.89
AT5G45360.1	Thale cress	nucleus	74.92	74.68
VIT_02s0087g00790.t01	Wine grape	nucleus	55.87	57.7
HORVU7Hr1G095390.2	Barley	cytosol	46.03	57.31
KRH28992	Soybean	nucleus	56.51	55.28
KRH76466	Soybean	nucleus	56.19	54.63
PGSC0003DMT400047541	Potato	nucleus	54.92	44.59
Os06t0709100-01	Rice	nucleus	50.48	42.4
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	50.79	41.78
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	50.79	41.67
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	50.48	41.41
KXG20829	Sorghum	nucleus	49.84	41.21
Solyc08g075380.2.1	Tomato	nucleus	53.97	40.87
PGSC0003DMT400004963	Potato	nucleus	53.02	40.14
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	50.79	38.55
Zm00001d014742_P001	Maize	nucleus	47.62	37.22
GSMUA_Achr1P10670_001	Banana	cytosol	51.43	32.02

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EnsemblPlantsGene:Bra025080	EnsemblPlants:Bra025080.1	EnsemblPlants:Bra025080.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M4E8H4
PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI000253F5B5	SEG:seg	:	:	:	:

Description

AT5G45360 (E=2e-114) | F-box family protein

Coordinates

chrA06:+:25035837..25037519

Molecular Weight (calculated)

36238.7 Da

IEP (calculated)

4.564

GRAVY (calculated)

-0.558

Length

315 amino acids

Sequence
(BLAST)

001: MSLSDDEDEC FARFLESEVS SVEDEEKTKE PEPKRQRIDK DKAKAVEKDG DQKEDRSNRD RNVVKRIESG VFSKVPTELF RHIFKFLSSE VDLLSCSLVC
101: KFLNFAASDE SLWRRLYCIR WGLMPSTRML RECAWKKLYI DRDEKDMIEL VRSCPTDFKE YYIQMQAAKR SQAPLAAQMV DDQIVLDKTV LDKVSMWKKS
201: KGLPDKAVVG HVCLGTKCDY HQIDDVFICQ ETGNVHVCDD NCKEVIFCRE SGNMVCTISG LCSESLLVQD DSDADEEEAE QEAEVLTGRG RFGRAFEFGY
301: NCESEQELDR SFGFC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.