Factsheet for PGSC0003DMT400047541

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0087g00790.t01	Wine grape	nucleus	55.41	70.49
KRH76466	Soybean	nucleus	55.93	66.98
KRH28992	Soybean	nucleus	55.15	66.46
HORVU7Hr1G095390.2	Barley	cytosol	43.3	66.4
PGSC0003DMT400004963	Potato	nucleus	66.49	62.02
AT5G45360.1	Thale cress	nucleus	45.36	55.7
CDY23126	Canola	nucleus	45.1	55.56
CDY64948	Canola	nucleus	44.85	55.41
Bra027603.1-P	Field mustard	nucleus	44.33	55.31
CDY39424	Canola	nucleus	44.59	55.1
CDY13058	Canola	nucleus	44.07	54.98
Bra025080.1-P	Field mustard	nucleus	44.59	54.92
Os06t0709100-01	Rice	nucleus	50.52	52.27
CDY35006	Canola	nucleus	14.95	50.0
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	48.2	48.83
KXG20829	Sorghum	nucleus	47.94	48.82
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	48.2	48.7
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	47.94	48.44
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	48.45	45.3
Zm00001d014742_P001	Maize	nucleus	44.33	42.68
GSMUA_Achr1P10670_001	Banana	cytosol	48.45	37.15

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102599876	MapMan:19.2.2.8.1.4.6	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:Herpes_UL92	InterPro:IPR001810	UniProt:M1BKY9	PFAM:PF03048
PFAM:PF12937	EnsemblPlantsGene:PGSC0003DMG400018477	PGSC:PGSC0003DMG400018477	EnsemblPlants:PGSC0003DMT400047541	PFscan:PS50181	PANTHER:PTHR22990
PANTHER:PTHR22990:SF27	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002967096	RefSeq:XP_006361225.1	SEG:seg

Description

F-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018477]

Coordinates

chr8:-:3587318..3595031

Molecular Weight (calculated)

43528.4 Da

IEP (calculated)

4.405

GRAVY (calculated)

-0.481

Length

388 amino acids

Sequence
(BLAST)

001: MVISDDEDES LAQFLESEVL AFSDQDEWKQ LEVEDDNDKF GVEEDHVTEK LRDVKDEGKE AAREEEENRG AKRMKFEEKQ GEKKVNALLS SESLALPIEF
101: KDEGECASSP AKMCETLMGK CDGASTNNIG RAPRSIEAGI LSKIPPELLH HILKFLSSED LVACSLVCKF LNGVASDESL WRQLYCLRWG LVLPTKKPRE
201: CAWKKLYIKR DSDDMVEFVR NCPMELKEYY IQMQAAKRSE APLPSQINDD RMILDKTVAD QVSIWKKSKG LGDNVVNGHA CSGETCAYHQ IGDVFVCEKT
301: GNVHVCDDTC REVVLDPTNG LLVCTISGHC FDSMLLSPDE MEPDVDQQQA GTTDEAEPLM GSGLFARAYL LGYNCHDDKE LKDALRFC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.