CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45360.1	CDX68112	AT1G75950.1	12795696
AT5G45360.1	CDX73212	AT1G75950.1	12795696
AT5G45360.1	CDX80590	AT1G75950.1	12795696
AT5G45360.1	CDX85931	AT1G75950.1	12795696
AT5G45360.1	CDX87650	AT1G75950.1	12795696
AT5G45360.1	CDY13521	AT1G75950.1	12795696
AT5G45360.1	CDY39073	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39424	Canola	nucleus	97.77	97.77
CDY35006	Canola	nucleus	32.48	87.93
CDY13058	Canola	nucleus	84.71	85.53
CDY23126	Canola	nucleus	85.67	85.4
AT5G45360.1	Thale cress	nucleus	75.48	75.0
VIT_02s0087g00790.t01	Wine grape	nucleus	55.73	57.38
HORVU7Hr1G095390.2	Barley	cytosol	46.18	57.31
KRH28992	Soybean	nucleus	56.69	55.28
KRH76466	Soybean	nucleus	56.69	54.94
PGSC0003DMT400047541	Potato	nucleus	55.41	44.85
Os06t0709100-01	Rice	nucleus	51.27	42.93
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	51.59	42.3
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	51.59	42.19
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	51.27	41.93
KXG20829	Sorghum	nucleus	50.0	41.21
Solyc08g075380.2.1	Tomato	nucleus	53.5	40.38
PGSC0003DMT400004963	Potato	nucleus	52.55	39.66
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	51.59	39.04
Zm00001d014742_P001	Maize	nucleus	47.77	37.22
GSMUA_Achr1P10670_001	Banana	cytosol	51.27	31.82

Protein Annotations

EnsemblPlants:CDY64948	EnsemblPlantsGene:GSBRNA2T00043894001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27	PFAM:PF12937
PFscan:PS50181	ProteinID:CDY64948	ProteinID:CDY64948.1	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI0004EC9CE1	UniProt:A0A078JBH9	MapMan:19.2.2.8.1.4.6	:	:	:

Description

BnaCnng45610DBnaCnng45610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBH9]

Coordinates

chrLK034605:-:23233..26304

Molecular Weight (calculated)

36041.5 Da

IEP (calculated)

4.557

GRAVY (calculated)

-0.568

Length

314 amino acids

Sequence
(BLAST)

001: MSLSDDEDEC FARFLESEVS SVEDEEKTKE PEPKRQRLNK DKTKAVEKDG DQKEDGSNKD RNVVKRIESG VFSKVPTELF RHIFKFLSSE DLLSCSLVCK
101: FLNFAASDES LWRRLYCIRW GLMPSTRMLR ECAWKKLYID RDEKDMIELV RSCPTDFKEY YIQMQAAKRS QAPLAAQMVD DQIVLDKTVL DKVSMWKKSK
201: GLPDKAVVGH VCLGTKCDYH QIDDVFICQE TGNVHVCDDN CKEVIFCRES GNMVCTISGL CSESLLVQDD SDADEEEAEQ EAEVLTGRGR FGRAFEFGYN
301: CESEQELDRS FGFC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.