Factsheet for Zm00001d014742_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20829	Sorghum	nucleus	83.13	87.93
HORVU7Hr1G095390.2	Barley	cytosol	50.12	79.84
Os06t0709100-01	Rice	nucleus	67.49	72.53
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	65.76	69.19
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	65.76	69.01
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	65.51	68.75
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	65.76	63.86
VIT_02s0087g00790.t01	Wine grape	nucleus	43.92	58.03
KRH28992	Soybean	nucleus	43.92	54.97
KRH76466	Soybean	nucleus	43.92	54.63
CDY64948	Canola	nucleus	37.22	47.77
CDY39424	Canola	nucleus	37.22	47.77
Bra025080.1-P	Field mustard	nucleus	37.22	47.62
Bra027603.1-P	Field mustard	nucleus	36.48	47.27
CDY13058	Canola	nucleus	36.23	46.95
CDY23126	Canola	nucleus	35.98	46.03
AT5G45360.1	Thale cress	nucleus	35.98	45.89
PGSC0003DMT400047541	Potato	nucleus	42.68	44.33
PGSC0003DMT400004963	Potato	nucleus	43.92	42.55
Solyc08g075380.2.1	Tomato	nucleus	43.42	42.07
CDY35006	Canola	nucleus	11.91	41.38
GSMUA_Achr1P10670_001	Banana	cytosol	47.15	37.55

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100284270	MapMan:19.2.2.8.1.4.6	UniProt:A0A1D6GW20	ProteinID:AQK67085.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538
InterPro:IPR001810	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI000843DE6C	EnsemblPlantsGene:Zm00001d014742	EnsemblPlants:Zm00001d014742_P001	EnsemblPlants:Zm00001d014742_T001	SEG:seg

Description

F-box protein SKIP31

Coordinates

chr5:+:61158657..61162310

Molecular Weight (calculated)

43972.5 Da

IEP (calculated)

4.166

GRAVY (calculated)

-0.618

Length

403 amino acids

Sequence
(BLAST)

001: MADVQGDNEA VLEDDAFPDD GPLDTEEGGG GEPISGGDEE EEEDVDGLAS FLESEILSGS SDEDPIDEQR QQKEEGDAAK NKRKQGSGSD GDGCSGSEGE
101: QTKRARREEK RRQAKGKAVA PQIDTGLFSN VPPELFLQIF KFLSSEDLIS CALVCRFMNA AASDETLWRR LYCMRWGLAS NAKFRECAWK NLYIQRDRED
201: MVEFVRNTPT EFKEYYIQMQ AAKRSQAPRP SEVNDDKVML DKTVADQVSS WKNSRGLTDE AVKGHSCSGN TCSYTQIGDA YICEKTGRVH VCDDACREFV
301: LDQSSGLLLC TISGHCFERW LCPDDEWDAD DTLTFGKFQD LQQAGVVDEA EPFMGSGRYG LGYADATGGL GGDATTTGHT ATTAGLGWGV ASMGYAAVIE
401: GLG

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.