CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76466	Soybean	nucleus	95.34	94.75
VIT_02s0087g00790.t01	Wine grape	nucleus	71.12	75.08
HORVU7Hr1G095390.2	Barley	cytosol	54.97	69.96
AT5G45360.1	Thale cress	nucleus	57.45	58.54
CDY64948	Canola	nucleus	55.28	56.69
Bra025080.1-P	Field mustard	nucleus	55.28	56.51
CDY39424	Canola	nucleus	54.97	56.37
Bra027603.1-P	Field mustard	nucleus	54.04	55.95
CDY23126	Canola	nucleus	54.66	55.87
CDY13058	Canola	nucleus	53.73	55.63
PGSC0003DMT400047541	Potato	nucleus	66.46	55.15
Os06t0709100-01	Rice	nucleus	61.49	52.8
CDY35006	Canola	nucleus	18.94	52.59
PGSC0003DMT400004963	Potato	nucleus	67.39	52.16
Solyc08g075380.2.1	Tomato	nucleus	67.39	52.16
KXG20829	Sorghum	nucleus	59.63	50.39
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	59.94	50.39
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	59.94	50.26
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	59.63	50.0
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	60.56	46.99
Zm00001d014742_P001	Maize	nucleus	54.97	43.92
GSMUA_Achr1P10670_001	Banana	cytosol	61.18	38.93

Protein Annotations

EMBL:ACUP02006776	EnsemblPlants:KRH28992	EnsemblPlantsGene:GLYMA_11G090700	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27
PFAM:PF12937	PFscan:PS50181	ProteinID:KRH28992	ProteinID:KRH28992.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI00023CC191	UniProt:I1LIG2	MapMan:19.2.2.8.1.4.6	:	:

Description

hypothetical protein

Coordinates

chr11:+:6862902..6865998

Molecular Weight (calculated)

36615.1 Da

IEP (calculated)

4.553

GRAVY (calculated)

-0.502

Length

322 amino acids

Sequence
(BLAST)

001: MTLSDDEDEN LAQFLESEVL SEVSDKEEEN VEEPKAKRKR VEEDEITKQK QSSDSSSAPK NIVVSNGVVL RRIETGYFSQ IPPELFNHIL KFLSSEDLVS
101: CSLVCRFLNY AASDEALWRR LYCMRWGILP PTRKLRECPW KKLYIQRDGE DMVELVRSCQ NEFKEYYIQM QAAKRSQAPH PSQLKDDRII LDKTLADQVS
201: SWKSSRGLSD TVVTDHACSG ETCSYYHIGD VFICEKTGQV HVCDDTCREL VMDPTNGLLV CTISGHCLDR LLSPSEEMEP DTQGGVADEA EPFMGSGRFA
301: RAYLLGYNCA DEKELEATLR FC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.