Factsheet for Bra027603.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45360.1	Bra003735.1-P	AT1G75950.1	12795696
AT5G45360.1	Bra008231.1-P	AT1G75950.1	12795696
AT5G45360.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13058	Canola	nucleus	99.36	99.36
CDY23126	Canola	nucleus	98.71	97.46
CDY35006	Canola	nucleus	35.69	95.69
Bra025080.1-P	Field mustard	nucleus	84.89	83.81
AT5G45360.1	Thale cress	nucleus	76.53	75.32
HORVU7Hr1G095390.2	Barley	cytosol	45.98	56.52
VIT_02s0087g00790.t01	Wine grape	nucleus	54.66	55.74
KRH28992	Soybean	nucleus	55.95	54.04
KRH76466	Soybean	nucleus	55.63	53.4
PGSC0003DMT400047541	Potato	nucleus	55.31	44.33
Os06t0709100-01	Rice	nucleus	51.45	42.67
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	51.45	41.78
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	51.45	41.67
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	51.13	41.41
KXG20829	Sorghum	nucleus	49.84	40.68
Solyc08g075380.2.1	Tomato	nucleus	53.7	40.14
PGSC0003DMT400004963	Potato	nucleus	53.7	40.14
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	51.45	38.55
Zm00001d014742_P001	Maize	nucleus	47.27	36.48
GSMUA_Achr1P10670_001	Banana	cytosol	52.73	32.41

Protein Annotations

EnsemblPlants:Bra027603.1	EnsemblPlants:Bra027603.1-P	EnsemblPlantsGene:Bra027603	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27
PFAM:PF12937	PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002542674
UniProt:M4EFP1	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

AT5G45360 (E=2e-122) | F-box family protein

Coordinates

chrA09:+:12931250..12933010

Molecular Weight (calculated)

35780.4 Da

IEP (calculated)

4.559

GRAVY (calculated)

-0.516

Length

311 amino acids

Sequence
(BLAST)

001: MSLSDDEDEC FARFLESEVS SVEDEEKTKE PEPKRQRIEK DKTKVVVDQK ENGNNKDRNG AKRIESGDFT KVPTELFRHI FKFLSSEDLL SCALVCKFLN
101: FTASDESLWR RLYCIRWGLM PSTRMLRECA WKKLYIDRDE KDMIELVRSC PPDFKVYYVQ MQAAKRSQAP LPSEMVDDRV VLDKTVLDKV SLWKKSKGLT
201: NKAVIGHVCL GTKCGYHQID DVFICEETGN VHVCDENCKE VIFCPDSGCM VCTISGLCSD SLVLETDSDT EQEEAELEAE ILTEKGRFDR AFEFGYNCES
301: EQELERTFGF C

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.