Factsheet for TraesCS7D01G401900.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	98.96	99.22
HORVU7Hr1G095390.2	Barley	cytosol	64.84	98.42
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	97.66	97.66
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	96.09	88.92
Os06t0709100-01	Rice	nucleus	75.26	77.07
KXG20829	Sorghum	nucleus	71.09	71.65
Zm00001d014742_P001	Maize	nucleus	68.75	65.51
VIT_02s0087g00790.t01	Wine grape	nucleus	51.82	65.25
KRH76466	Soybean	nucleus	51.04	60.49
KRH28992	Soybean	nucleus	50.26	59.94
CDY64948	Canola	nucleus	42.19	51.59
AT5G45360.1	Thale cress	nucleus	42.45	51.58
Bra027603.1-P	Field mustard	nucleus	41.67	51.45
CDY13058	Canola	nucleus	41.41	51.13
CDY39424	Canola	nucleus	41.67	50.96
Bra025080.1-P	Field mustard	nucleus	41.67	50.79
CDY23126	Canola	nucleus	41.15	50.16
PGSC0003DMT400047541	Potato	nucleus	48.7	48.2
PGSC0003DMT400004963	Potato	nucleus	49.74	45.91
Solyc08g075380.2.1	Tomato	nucleus	49.22	45.43
CDY35006	Canola	nucleus	13.28	43.97
GSMUA_Achr1P10670_001	Banana	cytosol	54.17	41.11

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:IPR001810	PFAM:PF12937
PFscan:PS50181	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27	SMART:SM00256	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS7D01G401900
EnsemblPlants:TraesCS7D01G401900.4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:518794246..518797414

Molecular Weight (calculated)

42653.1 Da

IEP (calculated)

4.178

GRAVY (calculated)

-0.669

Length

384 amino acids

Sequence
(BLAST)

001: MADGKDLGAA AAAEPDHDEG QPDLEEEGEL EAAAAGGGEE EEDVDVDGLA SFLEFEILSG SSEEDPLDQL EEGEEEKETR VNDEAKNGKR KQDSLSDGDG
101: SGSEDEHQKR ARKEKGKGKV LAEGPPQIDT GMFTNVPPEL FLQIFKFLSS EDLISCALVC RFMNAAASDE TLWRRLYCMR WGLSSNATSN AKLRECAWKS
201: LYIQQDREDM VEFVRYTPTE FKEYYIQMQA AKRSQAPLPS EVNDDKIVLD KTVADQVSSW KSRRGLTDDA VKGHSCSGST CYYKQIGDAY ICEKTGRVHV
301: CDDACREFVL DQASGLLVCT ISGHCFERFL CPDDEWDTCD ADQQQGGVTD EAEPFMGSGR FARAYQLGYS CADEKELEHA LRFC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.