Factsheet for VIT_02s0087g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45360.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76466	Soybean	nucleus	76.07	71.6
HORVU7Hr1G095390.2	Barley	cytosol	59.34	71.54
KRH28992	Soybean	nucleus	75.08	71.12
AT5G45360.1	Thale cress	nucleus	60.0	57.91
Bra025080.1-P	Field mustard	nucleus	57.7	55.87
CDY39424	Canola	nucleus	57.38	55.73
CDY64948	Canola	nucleus	57.38	55.73
PGSC0003DMT400047541	Potato	nucleus	70.49	55.41
Bra027603.1-P	Field mustard	nucleus	55.74	54.66
CDY23126	Canola	nucleus	56.39	54.6
CDY13058	Canola	nucleus	55.41	54.34
Os06t0709100-01	Rice	nucleus	64.59	52.53
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	65.25	51.96
Solyc08g075380.2.1	Tomato	nucleus	70.82	51.92
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	65.25	51.82
PGSC0003DMT400004963	Potato	nucleus	70.49	51.68
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	64.92	51.56
CDY35006	Canola	nucleus	19.02	50.0
KXG20829	Sorghum	nucleus	61.97	49.61
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	65.25	47.95
Zm00001d014742_P001	Maize	nucleus	58.03	43.92
GSMUA_Achr1P10670_001	Banana	cytosol	67.54	40.71

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100259709	wikigene:100259709	MapMan:19.2.2.8.1.4.6	ProteinID:CBI29192	ProteinID:CBI29192.3
UniProt:D7TFB9	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EMBL:FN595769	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	InterPro:Herpes_UL92	InterPro:IPR001810	EntrezGene:LOC100259709
wikigene:LOC100259709	PFAM:PF03048	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27
SMART:SM00256	SUPFAM:SSF81383	TIGR:TC54241	TIGR:TC55675	UniParc:UPI0001982C01	ArrayExpress:VIT_02s0087g00790
EnsemblPlantsGene:VIT_02s0087g00790	EnsemblPlants:VIT_02s0087g00790.t01	unigene:Vvi.4396	RefSeq:XP_002270881	RefSeq:XP_002270881.1	:

Description

No Description!

Coordinates

chr2:-:18359646..18364148

Molecular Weight (calculated)

34818.0 Da

IEP (calculated)

4.534

GRAVY (calculated)

-0.433

Length

305 amino acids

Sequence
(BLAST)

001: MTVSEDEDEN LAHFLESEVL SEASDQEKDA VAEQPQAKRL RVDEEGSKRS APKRIETGIF SKIPPELFHH ILKFLSSEDL VACSLVCRFL NCAASDESLW
101: RRLYCMRWGL LQPTKKFRQC AWKKLYIERD EEDMIEFVRN CPSEFKEYYI QMQVAKRSQA PLLSQVNDDR IILDKTVADQ VSSWKSSRGL TDKVDIDHNC
201: SGVTCTYYQI GDVFVCEKTG RVHVCDDTCR EVVTDTANDI VVCTISGHCF DRLLVSDEEP DIEQQQGGVT DEAEPFMGSG RFARAYLLGY NCADEKELEA
301: ALRFC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.