Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35006 | Canola | nucleus | 28.48 | 77.59 |
| CDY13058 | Canola | nucleus | 75.63 | 76.85 |
| Bra027603.1-P | Field mustard | nucleus | 75.32 | 76.53 |
| CDY23126 | Canola | nucleus | 75.63 | 75.87 |
| CDY64948 | Canola | nucleus | 75.0 | 75.48 |
| Bra025080.1-P | Field mustard | nucleus | 74.68 | 74.92 |
| CDY39424 | Canola | nucleus | 74.05 | 74.52 |
| VIT_02s0087g00790.t01 | Wine grape | nucleus | 57.91 | 60.0 |
| HORVU7Hr1G095390.2 | Barley | cytosol | 46.2 | 57.71 |
| KRH28992 | Soybean | nucleus | 58.54 | 57.45 |
| KRH76466 | Soybean | nucleus | 58.23 | 56.79 |
| PGSC0003DMT400047541 | Potato | nucleus | 55.7 | 45.36 |
| TraesCS7B01G308300.4 | Wheat | cytosol, mitochondrion, nucleus | 51.58 | 42.56 |
| Solyc08g075380.2.1 | Tomato | nucleus | 56.01 | 42.55 |
| TraesCS7D01G401900.4 | Wheat | cytosol, mitochondrion, nucleus | 51.58 | 42.45 |
| TraesCS7A01G408600.1 | Wheat | cytosol, nucleus, plastid | 51.27 | 42.19 |
| Os06t0709100-01 | Rice | nucleus | 50.0 | 42.13 |
| PGSC0003DMT400004963 | Potato | nucleus | 55.38 | 42.07 |
| KXG20829 | Sorghum | nucleus | 48.42 | 40.16 |
| HORVU7Hr1G095400.5 | Barley | cytosol, mitochondrion, nucleus | 52.22 | 39.76 |
| Zm00001d014742_P001 | Maize | nucleus | 45.89 | 35.98 |
| GSMUA_Achr1P10670_001 | Banana | cytosol | 52.22 | 32.61 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:834572 | UniProt:A0A178UE70 | ProteinID:AED95238.1 | EMBL:AK227481 |
| ArrayExpress:AT5G45360 | EnsemblPlantsGene:AT5G45360 | RefSeq:AT5G45360 | TAIR:AT5G45360 | RefSeq:AT5G45360-TAIR-G | EnsemblPlants:AT5G45360.1 |
| TAIR:AT5G45360.1 | EMBL:AY087595 | Unigene:At.21436 | ProteinID:BAB09164.1 | EMBL:BT002873 | EMBL:BT004395 |
| EMBL:BT005876 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR001810 | RefSeq:NP_568643.1 | ProteinID:OAO92078.1 | PFAM:PF12937 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50181 | PANTHER:PTHR22990 | PANTHER:PTHR22990:SF27 | UniProt:Q9FHK0 | SMART:SM00256 | SUPFAM:SSF81383 |
| UniParc:UPI000000BE0F | SEG:seg | : | : | : | : |
Description
SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
Coordinates
chr5:-:18384489..18386871
Molecular Weight (calculated)
36239.6 Da
IEP (calculated)
4.449
GRAVY (calculated)
-0.561
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.