CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28992	Soybean	nucleus	94.75	95.34
VIT_02s0087g00790.t01	Wine grape	nucleus	71.6	76.07
HORVU7Hr1G095390.2	Barley	cytosol	55.86	71.54
AT5G45360.1	Thale cress	nucleus	56.79	58.23
CDY64948	Canola	nucleus	54.94	56.69
Bra025080.1-P	Field mustard	nucleus	54.63	56.19
CDY39424	Canola	nucleus	54.32	56.05
PGSC0003DMT400047541	Potato	nucleus	66.98	55.93
Bra027603.1-P	Field mustard	nucleus	53.4	55.63
CDY23126	Canola	nucleus	54.01	55.56
CDY13058	Canola	nucleus	53.09	55.31
Solyc08g075380.2.1	Tomato	nucleus	67.9	52.88
Os06t0709100-01	Rice	nucleus	61.11	52.8
PGSC0003DMT400004963	Potato	nucleus	67.59	52.64
CDY35006	Canola	nucleus	18.83	52.59
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	60.49	51.17
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	60.49	51.04
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	60.19	50.78
KXG20829	Sorghum	nucleus	59.26	50.39
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	61.42	47.95
Zm00001d014742_P001	Maize	nucleus	54.63	43.92
GSMUA_Achr1P10670_001	Banana	cytosol	62.04	39.72

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100778591	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02000615	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_01G154100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Herpes_UL92	UniProt:I1J879
InterPro:IPR001810	EnsemblPlants:KRH76466	ProteinID:KRH76466	ProteinID:KRH76466.1	PFAM:PF03048	PFAM:PF12937
PFscan:PS50181	PANTHER:PTHR22990	PANTHER:PTHR22990:SF27	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00023378E9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:49136677..49139859

Molecular Weight (calculated)

37005.5 Da

IEP (calculated)

4.482

GRAVY (calculated)

-0.538

Length

324 amino acids

Sequence
(BLAST)

001: MTLSDDEDEN LAQFLESEVL SEVSDKEEEN VEEPKAKRAR LEEDEITKQK QSSDSLSAPK NIVVNNGVVP RRIETGYFSQ IPPELFHHIL KFLSSEDLVS
101: CSLVCRFLNY AASDEALWRR LYCMRWGMLP PTRKLRECPW KMLYIQRDGE DMVELVRSCQ NEFKEYYIQM QAAKRSQAPH PSQLKDDRII LDKTLADQVS
201: SWKSSRGLSD TVVTDHACSG ETCSYYHIGD VFICEKTGQV HVCDDTCREV VMDPTNELLV CTISGHCFDR LLSPSEMEPD TEQQQGGVTD EAEPFMGSGR
301: FARAYSLGYN CADEKELEAT LRFC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.