Factsheet for GSMUA_Achr1P10670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G095390.2	Barley	cytosol	35.77	71.54
VIT_02s0087g00790.t01	Wine grape	nucleus	40.71	67.54
KRH76466	Soybean	nucleus	39.72	62.04
KRH28992	Soybean	nucleus	38.93	61.18
Os06t0709100-01	Rice	nucleus	40.71	54.93
TraesCS7D01G401900.4	Wheat	cytosol, mitochondrion, nucleus	41.11	54.17
TraesCS7B01G308300.4	Wheat	cytosol, mitochondrion, nucleus	40.91	54.05
TraesCS7A01G408600.1	Wheat	cytosol, nucleus, plastid	40.91	53.91
KXG20829	Sorghum	nucleus	40.32	53.54
Bra027603.1-P	Field mustard	nucleus	32.41	52.73
CDY13058	Canola	nucleus	32.21	52.41
AT5G45360.1	Thale cress	nucleus	32.61	52.22
CDY23126	Canola	nucleus	32.41	52.06
Bra025080.1-P	Field mustard	nucleus	32.02	51.43
CDY64948	Canola	nucleus	31.82	51.27
CDY39424	Canola	nucleus	31.82	51.27
HORVU7Hr1G095400.5	Barley	cytosol, mitochondrion, nucleus	41.9	51.08
PGSC0003DMT400047541	Potato	nucleus	37.15	48.45
Solyc08g075380.2.1	Tomato	nucleus	39.33	47.84
PGSC0003DMT400004963	Potato	nucleus	39.13	47.6
Zm00001d014742_P001	Maize	nucleus	37.55	47.15
CDY35006	Canola	nucleus	10.67	46.55

Protein Annotations

EnsemblPlants:GSMUA_Achr1P10670_001	EnsemblPlants:GSMUA_Achr1T10670_001	EnsemblPlantsGene:GSMUA_Achr1G10670_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Herpes_UL92	InterPro:IPR001810	PANTHER:PTHR22990
PANTHER:PTHR22990:SF27	PFAM:PF03048	PFAM:PF12937	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI00029615CD	UniProt:M0RYS6	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box protein SKIP31 [Source:GMGC_GENE;Acc:GSMUA_Achr1G10670_001]

Coordinates

chr1:+:8056895..8063508

Molecular Weight (calculated)

57042.4 Da

IEP (calculated)

5.534

GRAVY (calculated)

-0.381

Length

506 amino acids

Sequence
(BLAST)

001: MFDRGQDNPD RPISSIPENA SRRLRPTTVY IAPSITSKAR EGEGEEPCLG FSGAAGPSMS KLYHGDKYWY RSQGHSYVIV HQTKVMAFGL ILIYIDEGVY
101: LESSTYIYVL ERWVREGAFG NQRTGFLSAD YSTLSHAEVF LFMLNPCRIR AGTVLCCLRL PTASNRPHLS PSSLICFLGF RSAMADREAA GGDDDDDVVL
201: ASFLESEILS GDQEETSAAR ASKRPRIEEE SSRQEIRNNA SWLPPPPPLR PRQIETGIFS KIPPELFHHI FKFLSSEDLT SCALVCKFMS FAASDESLWR
301: RLYCMRWGMD SSKGKFRACA WKKLYIQRDR DDMKGFVWNT PSEFREYYIQ MQAAKRSQAP LPSQVDDRVM LDRTVADQVS IWKSRRGLTD DAAIGHICSG
401: NTCSYSHIGD VFICERTGRV HVCDDACREV VVDRQSGGFV CTISGHCFDR LLSPEEELVT SENEQQQDGA VDEAEPFMGS GRFARAYLLG YNCDDEKELE
501: AALKFC

Best Arabidopsis Sequence Match ( AT5G45360.1 )
(BLAST)

001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC

Arabidopsis Description

SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.