Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027603.1-P | Field mustard | nucleus | 97.46 | 98.71 |
| CDY13058 | Canola | nucleus | 97.46 | 98.71 |
| CDY35006 | Canola | nucleus | 36.19 | 98.28 |
| CDY39424 | Canola | nucleus | 85.4 | 85.67 |
| CDY64948 | Canola | nucleus | 85.4 | 85.67 |
| AT5G45360.1 | Thale cress | nucleus | 75.87 | 75.63 |
| VIT_02s0087g00790.t01 | Wine grape | nucleus | 54.6 | 56.39 |
| HORVU7Hr1G095390.2 | Barley | cytosol | 45.08 | 56.13 |
| KRH28992 | Soybean | nucleus | 55.87 | 54.66 |
| KRH76466 | Soybean | nucleus | 55.56 | 54.01 |
| PGSC0003DMT400047541 | Potato | nucleus | 55.56 | 45.1 |
| Os06t0709100-01 | Rice | nucleus | 50.79 | 42.67 |
| TraesCS7B01G308300.4 | Wheat | cytosol, mitochondrion, nucleus | 50.16 | 41.25 |
| TraesCS7D01G401900.4 | Wheat | cytosol, mitochondrion, nucleus | 50.16 | 41.15 |
| TraesCS7A01G408600.1 | Wheat | cytosol, nucleus, plastid | 49.84 | 40.89 |
| KXG20829 | Sorghum | nucleus | 48.57 | 40.16 |
| Solyc08g075380.2.1 | Tomato | nucleus | 53.02 | 40.14 |
| PGSC0003DMT400004963 | Potato | nucleus | 52.7 | 39.9 |
| HORVU7Hr1G095400.5 | Barley | cytosol, mitochondrion, nucleus | 50.16 | 38.07 |
| Zm00001d014742_P001 | Maize | nucleus | 46.03 | 35.98 |
| GSMUA_Achr1P10670_001 | Banana | cytosol | 52.06 | 32.41 |
Protein Annotations
| EnsemblPlants:CDY23126 | EnsemblPlantsGene:GSBRNA2T00021636001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR22990 | PANTHER:PTHR22990:SF27 | PFAM:PF12937 |
| PFscan:PS50181 | ProteinID:CDY23126 | ProteinID:CDY23126.1 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 |
| UniParc:UPI0004EADE31 | UniProt:A0A078GCM3 | MapMan:19.2.2.8.1.4.6 | : | : | : |
Description
BnaC09g18800DBnaC09g18800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCM3]
Coordinates
chrLK032140:+:383012..385131
Molecular Weight (calculated)
36248.8 Da
IEP (calculated)
4.567
GRAVY (calculated)
-0.538
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSDDEDEC FARFLESEVS SVDDEEKTKE PEPKRQRIEK DKTKVVVDKD VDQKENGHNK DRNGAKRIES GDFTKVPTEL FRHIFKFLSS EDLLSCSLVC
101: KFLNFTASDE SLWRRLYCIR WGLMPSTRML RECAWKKLYI DRDEKDMIEL VRSCPPDFKV YYVQMQAAKR SQAPLPSEMV DDRVVLDKTV LDKVSLWKKS
201: KGLTNKAVIG HVCLGTKCGY HQIDDVFICE ETGNVHVCDE NCKEVIFCPD SGCMVCTISG LCSDSLVLET DSDTDQEEAE LEAEILTEKG RFDRAFEFGY
301: NCESEQELER TFGFC
101: KFLNFTASDE SLWRRLYCIR WGLMPSTRML RECAWKKLYI DRDEKDMIEL VRSCPPDFKV YYVQMQAAKR SQAPLPSEMV DDRVVLDKTV LDKVSLWKKS
201: KGLTNKAVIG HVCLGTKCGY HQIDDVFICE ETGNVHVCDE NCKEVIFCPD SGCMVCTISG LCSDSLVLET DSDTDQEEAE LEAEILTEKG RFDRAFEFGY
301: NCESEQELER TFGFC
001: MSVSDEEDEC FARFLESEVS SVEDKEETKE PEAKRQRIEK GETKALEKDE DQKENGNKDK TDAKRIESGV FTNVPTELFR HILKFLSSED LVSCSLVCKF
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC
101: LNFAAADESL WRRLYCIRWG LTLPSRKLRE SAWKKLYIDR DEQDMIELVR TCPSDFKEYY VHMQAAKRSQ APLPSQMVDD RIILDNTVLE QVSLWKKSKG
201: LTDKAVTGHI CLGTKCSYHQ IDDVFICKET GNVHVCDDNC KEVILSPEGD LMVCTISGVC SDTLLVQTEP DADGCYEEEA ELEAEVFTDK SRLARAFELG
301: YNCDDEQELE RTLRFC
Arabidopsis Description
SKIP31F-box protein SKIP31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.