CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G21950.1	CDX68112	AT1G75950.1	12795696
AT2G21950.1	CDX73212	AT1G75950.1	12795696
AT2G21950.1	CDX80590	AT1G75950.1	12795696
AT2G21950.1	CDX85931	AT1G75950.1	12795696
AT2G21950.1	CDX87650	AT1G75950.1	12795696
AT2G21950.1	CDY13521	AT1G75950.1	12795696
AT2G21950.1	CDY39073	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15853	Canola	cytosol	88.62	88.62
AT2G21950.1	Thale cress	cytosol	79.4	78.76
Solyc04g051870.1.1	Tomato	extracellular	55.01	56.86
PGSC0003DMT400042717	Potato	cytosol	54.74	56.58
VIT_07s0031g01580.t01	Wine grape	plastid	55.01	56.23
KRH53797	Soybean	cytosol	54.2	55.25
KRG89620	Soybean	cytosol	20.05	55.22
KRH64149	Soybean	cytosol	53.66	55.15
GSMUA_Achr2P14860_001	Banana	cytosol, endoplasmic reticulum, plastid	43.09	42.63
TraesCS2B01G130200.1	Wheat	cytosol, endoplasmic reticulum, plastid	39.84	38.99
EER97716	Sorghum	plastid	39.84	38.89
TraesCS2A01G111200.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	39.57	38.73
CDY69098	Canola	cytosol, plastid	38.75	38.34
Zm00001d007152_P001	Maize	plastid	39.02	38.3
Os07t0673700-01	Rice	cytosol	39.3	38.26
CDY44445	Canola	cytosol	38.48	37.97
CDY56757	Canola	plastid	38.48	37.77
CDY15875	Canola	cytosol	28.73	34.98
CDX99573	Canola	cytosol	29.54	33.85
CDY59764	Canola	cytosol	35.5	33.76
CDY13795	Canola	cytosol	35.23	33.16
HORVU2Hr1G019280.1	Barley	cytosol	33.88	32.98
CDY13796	Canola	cytosol	33.06	31.94
CDX99574	Canola	cytosol	28.73	31.18
CDY15078	Canola	extracellular	22.49	29.33
CDY15873	Canola	cytosol	12.2	27.61
TraesCS2D01G111900.1	Wheat	nucleus	32.79	26.59
CDX72708	Canola	plastid	39.57	19.36

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078I5U4	EnsemblPlants:CDY46225	ProteinID:CDY46225	ProteinID:CDY46225.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00083544001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24414	PANTHER:PTHR24414:SF23	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI0004EE4B85	SEG:seg	:	:	:	:

Description

BnaCnng13760DBnaCnng13760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5U4]

Coordinates

chrLK032655:+:92779..94172

Molecular Weight (calculated)

40567.8 Da

IEP (calculated)

8.534

GRAVY (calculated)

-0.057

Length

369 amino acids

Sequence
(BLAST)

001: MAATTSSSDD PPEPKTPTQL IPSLPDDVAL NCLARVSRCD HPNLSLVSKS FRSLPKSPLL YAIRSLANAT ENILYVAIRI PPETGARWFT LLRRASTNSH
101: LLVPIPSCPS PSLVGSAYAV VGSEIYVIGG SVKDVPSSSV WVLNCKFHTW RRVANMRVGR EFAAAGVIDG KIYVIGGCVV DNWARSINWA EVFDVKAQTW
201: EAVASPGVEV REKWMHASAV LEGRVYAMAD RNGVVYEPSK REWGVPEKRL DLGWRGRACV IEDVLYCYDY LGKIRGYDPK ERVWREVRGV ESLPKFLCGA
301: TMANRGGKLA VLWEGKAGSG GARRMEIWCA EIEVERRGEG GIWGKILWSD AVFTVPNDSA IVNCLAATV

Best Arabidopsis Sequence Match ( AT2G21950.1 )
(BLAST)

001: MAATTSSGDE PPETKSPAQL IPLLSEDVAL SCLARVPRCH YPILSLVSKT FRSLPTSPLL YATRALVGAT ENILYVAIRI PPESGACWFT LLHRTLSNST
101: NSKMLVPIPS CPSPSLVGSA YVVVDSEIYV IGGSIRDVPS SSVWVLDCRF HTWRRVSNMR VGREFAAAGV IDGKIYVIGG CVVDNWARSI NWAEMFDIKT
201: QTWEPVASPG MEVREKWMHA SAVMEGKVYA MADRNGVVYE PKEKKWEMPE KRLDLGWRGR ACVIENILYC YDYLGKIRGY DPKERIWREL KGVESLPKFL
301: CGATMANRGG KLTVLWEGKA GSGGSRRMEI WCAEIDVGRR GEREIWGKIE WSGTVLTVPN ESAIVNCLAA TV

Arabidopsis Description

SKIP6F-box/kelch-repeat protein SKIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.